Use library() with all packages since not using Depends anymore

inst/rmarkdown/templates/thesis/skeleton/01-chap1.Rmd

@@ -117,7 +117,7 @@ We begin by checking to ensure that needed packages are installed and then we lo
 
 ```{r load_pkgs, message=FALSE}
 # List of packages required for this analysis
-pkg <- c("dplyr", "ggplot2", "knitr", "bookdown", "devtools")
+pkg <- c("dplyr", "ggplot2", "knitr", "bookdown")
 # Check if packages are not installed and assign the
 # names of the packages not installed to the variable new.pkg
 new.pkg <- pkg[!(pkg %in% installed.packages())]
@@ -126,8 +126,11 @@ new.pkg <- pkg[!(pkg %in% installed.packages())]
 if (length(new.pkg)) {
   install.packages(new.pkg, repos = "https://cran.rstudio.com")
 }
-# Load packages (thesisdown will load all of the packages as well)
+# Load packages
 library(thesisdown)
+library(dplyr)
+library(ggplot2)
+library(knitr)
 ```
 
 \clearpage

inst/rmarkdown/templates/thesis/skeleton/03-chap3.Rmd

@@ -65,6 +65,9 @@ if (!require(thesisdown)) {
   }
 }
 library(thesisdown)
+library(dplyr)
+library(ggplot2)
+library(knitr)
 flights <- read.csv("data/flights.csv", stringsAsFactors = FALSE)
 ```
 
@@ -73,7 +76,7 @@ flights <- read.csv("data/flights.csv", stringsAsFactors = FALSE)
 
 ## Tables
 
-In addition to the tables that can be automatically generated from a data frame in **R** that you saw in [R Markdown Basics] using the `kable` function, you can also create tables using _pandoc_. (More information is available at <https://pandoc.org/README.html#tables>.)  This might be useful if you don't have values specifically stored in **R**, but you'd like to display them in table form.  Below is an example.  Pay careful attention to the alignment in the table and hyphens to create the rows and columns.
+In addition to the tables that can be automatically generated from a data frame in **R** that you saw in [R Markdown Basics] using the `kable()` function, you can also create tables using _pandoc_. (More information is available at <https://pandoc.org/README.html#tables>.)  This might be useful if you don't have values specifically stored in **R**, but you'd like to display them in table form.  Below is an example.  Pay careful attention to the alignment in the table and hyphens to create the rows and columns.
 
 ----------------------------------------------------------------------------------
   Factors                    Correlation between Parents & Child      Inherited