This folder contains bash scripts used for calculation of cross-sectional area (CSA) at C2-C3 vertebral levels from
T2w images for CanProCo and spine-generic dataset. Both scripts can be run using SCT wrapper sct_run_batch.
The folder also contains python script used for figure creation (rainplot, scatter plot with linear fit) and statistics computation (ANOVA, Kruskal-Wallis H-test, partial correlation).