This repository contains the code used in the different projects of the Canadian Prospective Cohort to Understand Progression in MS (CanProCo).
- Computing Cross-Sectional Area (CSA)
- nnUNet training
- Dataset analysis of MS lesions
- Building lesion frequency maps
- Using the model for MS lesion segmentation
Tip
For manual corrections of spinal cord masks and MS lesion maks, please refer to this repository: manual-correction and its wiki for examples.