r20240125

What's Changed

• scripts-t2w_csa/create_T2w_csa_figure.py script improvements by @valosekj in #32
• Include spine-generic values as boxplots (instead of gray rectangles) by @valosekj in #35
• Add script to generate sagittal lesion QC by @valosekj in #36
• Moved for better visibility by @jcohenadad in #50
• Modification of exclude.yml file by @plbenveniste in #63
• Segment SC using contrast agnostic model by @valosekj in #44
• Updating exclude.yml file with subjects without disc labels by @plbenveniste in #64
• Register PSIR/STIR to PAM50 and generate lesion frequency maps by @valosekj in #67
• Region based nnunet scripts by @plbenveniste in #66
• Dataframe analysis by @plbenveniste in #51

New Contributors

• @plbenveniste made their first contribution in #63

Full Changelog: r20230302...r20240125

The region-based 2d and 3D nnUNet model trained on STIR and inverted-PSIR can be found in the attached files.

r20230302

What's Changed

• Update documentation for manual lesion creation by @jcohenadad in #25

Full Changelog: r20230120...r20230302

r20230120

A release associated with the OHBM 2023 abstract.

CSV files with CSA values:
csa-SC_T2w_canproco.csv
csa-SC_T2w_spinegeneric.csv