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  1. YosefLab/Cassiopeia YosefLab/Cassiopeia Public

    A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction

    Python 83 25

  2. PyDESeq2 PyDESeq2 Public

    Forked from owkin/PyDESeq2

    A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA. Forked and heavily edited to accept sparse counts matrix.

    Python

  3. snj-benchmarking snj-benchmarking Public

    Jupyter Notebook 1

  4. ivan-cassiopeia-benchmarking ivan-cassiopeia-benchmarking Public

    Distance Metric benchmarking for Yosef Lab work on Cassiopeia.

    Jupyter Notebook