Fix of dieterich-lab/DCC#103

jakobilab · Aug 3, 2022 · 87c0390 · 87c0390
1 parent 044ac68
commit 87c0390
Showing 1 changed file with 3 additions and 2 deletions.
diff --git a/circtools/detect/Circ_nonCirc_Exon_Match.py b/circtools/detect/Circ_nonCirc_Exon_Match.py
@@ -88,8 +88,8 @@ def modifyExon_id(self, exon_gtf_file):
                 # if gff:
                 # 	custom_exon_id = ';custom_exon_id'+'='+feature.attr['transcript_id']+':'+str(exon_number[feature.attr['transcript_id']])
                 # else:
-                custom_exon_id = '; custom_exon_id' + ' ' + '"' + feature.attr['transcript_id'] + ':' + str(
-                    exon_number[feature.attr['transcript_id']]) + '"'
+                custom_exon_id = '; custom_exon_id' + ' ' + feature.attr['transcript_id'] + ':' + str(
+                    exon_number[feature.attr['transcript_id']])
             except KeyError:
                 # Try assume gff format
                 try:
@@ -219,6 +219,7 @@ def getAdjacent(self, custom_exon_id, start=True, reverse=False):
                 exon_number = int(custom_exon_id.split(':')[1]) + 1
         else:
             if start:
+                print(custom_exon_id)
                 exon_number = int(custom_exon_id.split(':')[1]) - 1
             else:
                 exon_number = int(custom_exon_id.split(':')[1]) + 1