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@janelia-cellmap

CellMap Project Team

Using computer vision and machine learning techniques to scalably detect subcellular structures, such as organelles, in datasets generated with next-gen vEM

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  1. dacapo dacapo Public

    A framework for easy application of established machine learning techniques on large, multi-dimensional images.

    Python 38 4

  2. cellmap-models cellmap-models Public

    Repository of model architectures and network weights used for CellMap segmentations.

    Python 9

  3. cellmap-data cellmap-data Public

    Utility for loading CellMap data for machine learning training, utilizing PyTorch, TensorStore, Xarray, and PyDantic.

    Python 1 1

Repositories

Showing 10 of 60 repositories
  • cellmap-schemas Public

    Schemas for our data

    janelia-cellmap/cellmap-schemas’s past year of commit activity
    Python 2 BSD-3-Clause 1 1 2 Updated Sep 20, 2024
  • dacapo Public

    A framework for easy application of established machine learning techniques on large, multi-dimensional images.

    janelia-cellmap/dacapo’s past year of commit activity
    Python 38 BSD-3-Clause 4 19 (4 issues need help) 7 Updated Sep 20, 2024
  • rusty_mws Public Forked from brianreicher/rusty_mws

    A package for a parallelized Rust-based implementation of Mutex Watershed image segmentation, built using MongoDB and Daisy.

    janelia-cellmap/rusty_mws’s past year of commit activity
    Python 1 Apache-2.0 2 0 1 Updated Sep 17, 2024
  • fibsem-tools Public

    Tools for handling FIB-SEM data and annotations

    janelia-cellmap/fibsem-tools’s past year of commit activity
    Python 17 MIT 8 9 3 Updated Sep 16, 2024
  • n5_to_ome_zarr Public

    This program converts a .n5 file into a .zarr file with ome-ngff multiscale metadata .zattrs file

    janelia-cellmap/n5_to_ome_zarr’s past year of commit activity
    Python 1 0 0 0 Updated Sep 16, 2024
  • janelia-cellmap/cellmap-n5-to-zarr’s past year of commit activity
    Python 0 BSD-3-Clause 0 0 0 Updated Sep 16, 2024
  • cellmap-data Public

    Utility for loading CellMap data for machine learning training, utilizing PyTorch, TensorStore, Xarray, and PyDantic.

    janelia-cellmap/cellmap-data’s past year of commit activity
    Python 1 BSD-3-Clause 1 1 2 Updated Sep 12, 2024
  • openorganelle Public

    A portal for viewing FIB-SEM datasets

    janelia-cellmap/openorganelle’s past year of commit activity
    TypeScript 10 2 23 4 Updated Sep 9, 2024
  • openorganelle-blog Public

    Periodic content for openorganelle

    janelia-cellmap/openorganelle-blog’s past year of commit activity
    0 BSD-3-Clause 2 5 0 Updated Sep 9, 2024
  • cellmap-models Public

    Repository of model architectures and network weights used for CellMap segmentations.

    janelia-cellmap/cellmap-models’s past year of commit activity
    Python 9 BSD-3-Clause 0 1 0 Updated Aug 13, 2024

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