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beta: select #dimensions for ordination of dissimilarity

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@jbferet jbferet released this 11 Jan 17:26
· 146 commits to master since this release

biodivMapR v1.9.0

Changes

  • Added dimMDS defining number of dimensions to run PCoA for beta diversity
  • exported functions from beta library
  • updated documentation

Fixes

  • corrected weighted distance from nearest neighbors: assign exact coordinates of a sample when dissimilarity = 0
  • temporary: discarded evenness from functional diversity as it uses emstreeR and requires binding to mlpack