Add bullet points and fix my syntax errors (#16, #17)

The command passed to `shell` must be a string because a Snakefile
is a Python script. I was thinking of YAML syntax

CHANGELOG.md

@@ -22,6 +22,16 @@ Example that logs stdout and stderr to separate files (`separate-stderr`)
 
 [issue-14]: https://github.com/jdblischak/smk-simple-slurm/issues/14
 
+Example that conditionally specifies a resource for a subset of rules
+([TomHarrop][], [#16][issue-16], [#17][pr-17])
+
+Example that lists multiple partitions for Slurm to choose from ([TomHarrop][],
+[#16][issue-16], [#17][pr-17])
+
+[TomHarrop]: https://github.com/TomHarrop
+[issue-16]: https://github.com/jdblischak/smk-simple-slurm/issues/16
+[pr-17]: https://github.com/jdblischak/smk-simple-slurm/pull/17
+
 ## v1.3.0 - 2022-08-09
 
 New status script `status-sacct-robust.sh` that re-runs `sacct` multiple times

examples/README.md

@@ -6,6 +6,9 @@ them on your cluster to confirm the expected behavior.
 * `cluster-cancel` - Cancel all submitted jobs with `scancel` when the main
   Snakemake process is cancelled (requires Snakemake 7.0.0+)
 
+* `conditional-resource` - Conditionally specify a resource for a subset of
+  rules
+
 * `dynamic-resources` - Increase memory for a rule on restart after each failed
   attempt
 
@@ -17,6 +20,8 @@ them on your cluster to confirm the expected behavior.
 * `jobs-per-second` - Measure how many jobs Snakemake can submit to Slurm per
   second
 
+* `list-partitions` - List multiple partitions for Slurm to choose from
+
 * `log-file-date` - Insert the current date into the log file path
 
 * `many-input-files` - Use a custom jobscript when a rule has many thousands of

examples/conditional-resource/README.md

@@ -30,8 +30,16 @@ adding the `partitionFlag` resource to the rule, as in the following Snakefile:
 rule withPartitionFlag:
     resources:
         partitionFlag="--partition=aSpecificPartition",
-    shell: echo "executed on aSpecificPartition"
- 
+    shell:
+        'echo "executed on aSpecificPartition"'
+
+
 rule withoutPartitionFlag:
-    shell: echo "executed on whichever partition Slurm chose"
+    shell:
+        'echo "executed on whichever partition Slurm chose"'
+
 ```
+
+**Note:** This example was inspired by the discussion in [Issue #16][issue-16]
+
+[issue-16]: https://github.com/jdblischak/smk-simple-slurm/issues/16

examples/conditional-resource/Snakefile

@@ -2,7 +2,10 @@
 rule withPartitionFlag:
     resources:
         partitionFlag="--partition=aSpecificPartition",
-    shell: echo "executed on aSpecificPartition"
-
+    shell:
+        'echo "executed on aSpecificPartition"'
+
+
 rule withoutPartitionFlag:
-    shell: echo "executed on whichever partition Slurm chose"
+    shell:
+        'echo "executed on whichever partition Slurm chose"'

examples/list-partitions/README.md

@@ -31,8 +31,16 @@ You can still specify a partition for jobs in the Snakefile as usual:
 rule partition1_only:
     resources:
         partition="partition1",
-    shell: echo "executed on partition1"
-
+    shell:
+        'echo "executed on partition1"'
+
+
 rule any_partition:
-    shell: echo "executed on whichever partition Slurm chose"
+    shell:
+        'echo "executed on whichever partition Slurm chose"'
+
 ```
+
+**Note:** This example was inspired by the discussion in [Issue #16][issue-16]
+
+[issue-16]: https://github.com/jdblischak/smk-simple-slurm/issues/16

examples/list-partitions/Snakefile

@@ -1,7 +1,10 @@
 rule partition1_only:
     resources:
         partition="partition1",
-    shell: echo "executed on partition1"
-
+    shell:
+        'echo "executed on partition1"'
+
+
 rule any_partition:
-    shell: echo "executed on whichever partition Slurm chose"
+    shell:
+        'echo "executed on whichever partition Slurm chose"'