bump version to 2.0.1

CHANGELOG.md

@@ -7,6 +7,7 @@ This project follows the [Gitflow Workflow model](https://www.atlassian.com/git/
 ## [Unreleased]
 The Unreleased section will be empty for tagged releases. Unreleased functionality appears in the develop branch.
 
+## [2.0.1] - 2017-09-29
 ### Fixed
 - SSW emulation seg fault when using score_size flag.
 
@@ -180,7 +181,8 @@ First stable, production-ready version of parasail.
 
 [parasail-python]: https://github.com/jeffdaily/parasail-python
 
-[Unreleased]: https://github.com/jeffdaily/parasail/compare/v2.0...develop
+[Unreleased]: https://github.com/jeffdaily/parasail/compare/v2.0.1...develop
+[2.0.1]: https://github.com/jeffdaily/parasail/compare/v2.0...v2.0.1
 [2.0]:   https://github.com/jeffdaily/parasail/compare/v1.3.1...v2.0
 [1.3.1]: https://github.com/jeffdaily/parasail/compare/v1.3...v1.3.1
 [1.3]:   https://github.com/jeffdaily/parasail/compare/v1.2...v1.3

configure

@@ -1,6 +1,6 @@
 #! /bin/sh
 # Guess values for system-dependent variables and create Makefiles.
-# Generated by GNU Autoconf 2.69 for Pairwise Sequence Alignment Library 1.3.1.
+# Generated by GNU Autoconf 2.69 for Pairwise Sequence Alignment Library 2.0.1.
 #
 # Report bugs to <jeff.daily@pnnl.gov>.
 #
@@ -590,8 +590,8 @@ MAKEFLAGS=
 # Identity of this package.
 PACKAGE_NAME='Pairwise Sequence Alignment Library'
 PACKAGE_TARNAME='parasail'
-PACKAGE_VERSION='1.3.1'
-PACKAGE_STRING='Pairwise Sequence Alignment Library 1.3.1'
+PACKAGE_VERSION='2.0.1'
+PACKAGE_STRING='Pairwise Sequence Alignment Library 2.0.1'
 PACKAGE_BUGREPORT='jeff.daily@pnnl.gov'
 PACKAGE_URL=''
 
@@ -1376,7 +1376,7 @@ if test "$ac_init_help" = "long"; then
   # Omit some internal or obsolete options to make the list less imposing.
   # This message is too long to be a string in the A/UX 3.1 sh.
   cat <<_ACEOF
-\`configure' configures Pairwise Sequence Alignment Library 1.3.1 to adapt to many kinds of systems.
+\`configure' configures Pairwise Sequence Alignment Library 2.0.1 to adapt to many kinds of systems.
 
 Usage: $0 [OPTION]... [VAR=VALUE]...
 
@@ -1446,7 +1446,7 @@ fi
 
 if test -n "$ac_init_help"; then
   case $ac_init_help in
-     short | recursive ) echo "Configuration of Pairwise Sequence Alignment Library 1.3.1:";;
+     short | recursive ) echo "Configuration of Pairwise Sequence Alignment Library 2.0.1:";;
    esac
   cat <<\_ACEOF
 
@@ -1563,7 +1563,7 @@ fi
 test -n "$ac_init_help" && exit $ac_status
 if $ac_init_version; then
   cat <<\_ACEOF
-Pairwise Sequence Alignment Library configure 1.3.1
+Pairwise Sequence Alignment Library configure 2.0.1
 generated by GNU Autoconf 2.69
 
 Copyright (C) 2012 Free Software Foundation, Inc.
@@ -2420,7 +2420,7 @@ cat >config.log <<_ACEOF
 This file contains any messages produced by compilers while
 running configure, to aid debugging if configure makes a mistake.
 
-It was created by Pairwise Sequence Alignment Library $as_me 1.3.1, which was
+It was created by Pairwise Sequence Alignment Library $as_me 2.0.1, which was
 generated by GNU Autoconf 2.69.  Invocation command line was
 
   $ $0 $@
@@ -2858,14 +2858,15 @@ AM_BACKSLASH='\'
 # parasail version 1.0.3: 1:3:0 (ABI version 1)
 # parasail version 1.1.0: 1:4:0 (ABI version 1)
 # parasail version 1.1.1: 1:5:0 (ABI version 1)
-# parasail version 1.1.2: 1:5:0 (ABI version 1)
+# parasail version 1.1.2: 1:5:0 (ABI version 1) no change
 # parasail version 1.2.0: 2:0:0 (ABI version 2)
 # parasail version 1.3.0: 2:0:0 (ABI version 2) no change
 # parasail version 1.3.1: 2:0:0 (ABI version 2) no change
 # parasail version 2.0.0: 3:0:0 (ABI version 3)
+# parasail version 2.0.1: 3:1:0 (ABI version 3)
 #
 # libparasail -version-info current:revision:age
-LTVER="3:0:0"
+LTVER="3:1:0"
 
 
 ###############################################################################
@@ -3318,7 +3319,7 @@ fi
 
 # Define the identity of the package.
  PACKAGE='parasail'
- VERSION='1.3.1'
+ VERSION='2.0.1'
 
 
 cat >>confdefs.h <<_ACEOF
@@ -19998,7 +19999,7 @@ cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1
 # report actual input values of CONFIG_FILES etc. instead of their
 # values after options handling.
 ac_log="
-This file was extended by Pairwise Sequence Alignment Library $as_me 1.3.1, which was
+This file was extended by Pairwise Sequence Alignment Library $as_me 2.0.1, which was
 generated by GNU Autoconf 2.69.  Invocation command line was
 
   CONFIG_FILES    = $CONFIG_FILES
@@ -20064,7 +20065,7 @@ _ACEOF
 cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
 ac_cs_config="`$as_echo "$ac_configure_args" | sed 's/^ //; s/[\\""\`\$]/\\\\&/g'`"
 ac_cs_version="\\
-Pairwise Sequence Alignment Library config.status 1.3.1
+Pairwise Sequence Alignment Library config.status 2.0.1
 configured by $0, generated by GNU Autoconf 2.69,
   with options \\"\$ac_cs_config\\"
 

configure.ac

@@ -32,14 +32,15 @@ AC_SUBST([PACKAGE_VERSION])
 # parasail version 1.0.3: 1:3:0 (ABI version 1)
 # parasail version 1.1.0: 1:4:0 (ABI version 1)
 # parasail version 1.1.1: 1:5:0 (ABI version 1)
-# parasail version 1.1.2: 1:5:0 (ABI version 1)
+# parasail version 1.1.2: 1:5:0 (ABI version 1) no change
 # parasail version 1.2.0: 2:0:0 (ABI version 2)
 # parasail version 1.3.0: 2:0:0 (ABI version 2) no change
 # parasail version 1.3.1: 2:0:0 (ABI version 2) no change
 # parasail version 2.0.0: 3:0:0 (ABI version 3)
+# parasail version 2.0.1: 3:1:0 (ABI version 3)
 #
 # libparasail -version-info current:revision:age
-LTVER="3:0:0"
+LTVER="3:1:0"
 AC_SUBST([LTVER])
 
 ###############################################################################

parasail.h

@@ -17,7 +17,7 @@ extern "C" {
 /* Version macros for compile-time API version detection */
 #define PARASAIL_VERSION_MAJOR 2
 #define PARASAIL_VERSION_MINOR 0
-#define PARASAIL_VERSION_PATCH 0
+#define PARASAIL_VERSION_PATCH 1
 
 #define PARASAIL_MAKE_VERSION(major, minor, patch) \
     ((major) * 10000 + (minor) * 100 + (patch))