2.5

Added

• Position-Specific Scoring Matrix Alignment (see README.md)
  • parasail_matrix_t attributes type, length, alphabet, and query
  • pssm matrix functions
    • parasail_matrix_pssm_create
    • parasail_matrix_pssm_create_case_sensitive
    • parasail_matrix_convert_square_to_pssm

Changed

• Alignment functions now verify inputs as follows
  • input sequences are not null and lengths are greater than zero
  • input matrix is not null
  • open and gap penalties are greater than or equal to zero
• parasail_matrix_from_file can now parse a simple pssm format (see README.md)

Fixed

• Failure linking against OpenMP on macOS [#91] [#92] (jvkersch)