python_seq_analysis

Miscellaneous python scripts to handle sequence data

concatenate_sanger.py

Pair-end assemble Sanger sequences provided as ab1 files.

filter_abi_seqs.py

Quality-filters and extracts a fasta file from an ABI sequencer file. Alternatively, option -db outputs in tabular format for importing into a database.

filter_fasta_seqs.py

Filters fasta sequences by size and rename.

subset_fasta_seqs.py

Subsets sequences from a fasta file.