Update docker-test.yml to have default secrets #161
Workflow file for this run
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| # Candace Savonen March 2024 | ||
| name: Pull Request | ||
| on: | ||
| pull_request: | ||
| branches: [ main, staging ] | ||
| jobs: | ||
| dockerfiles-changed: | ||
| name: Detect changed Dockerfiles | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - name: Checkout | ||
| uses: actions/checkout@v3 | ||
| with: | ||
| fetch-depth: 0 | ||
| - name: Get specific changed files | ||
| id: base_ottr | ||
| uses: tj-actions/changed-files@v14.5 | ||
| with: | ||
| files: base_ottr/* | ||
| - name: Get specific changed files | ||
| id: ottrpal | ||
| uses: tj-actions/changed-files@v14.5 | ||
| with: | ||
| files: ottrpal/* | ||
| - name: Get specific changed files | ||
| id: bioconductor | ||
| uses: tj-actions/changed-files@v14.5 | ||
| with: | ||
| files: bioconductor/* | ||
| - name: Get specific changed files | ||
| id: python | ||
| uses: tj-actions/changed-files@v14.5 | ||
| with: | ||
| files: ottr_python/* | ||
| - name: Get specific changed files | ||
| id: quarto | ||
| uses: tj-actions/changed-files@v14.5 | ||
| with: | ||
| files: ottr_quarto/* | ||
| - run: | | ||
| echo ${{steps.base_ottr.outputs.any_changed}} | ||
| echo ${{steps.ottrpal.outputs.any_changed}} | ||
| echo ${{steps.bioconductor.outputs.any_changed}} | ||
| echo ${{steps.python.outputs.any_changed}} | ||
| echo ${{steps.quarto.outputs.any_changed}} | ||
| outputs: | ||
| base_ottr_changed: ${{steps.base_ottr.outputs.any_changed}} | ||
| ottrpal_changed: ${{steps.ottrpal.outputs.any_changed}} | ||
| bioconductor_changed: ${{steps.bioconductor.outputs.any_changed}} | ||
| python_changed: ${{steps.python.outputs.any_changed}} | ||
| quarto_changed: ${{steps.quarto.outputs.any_changed}} | ||
| build-base: | ||
| name: Build base ottr image | ||
| needs: dockerfiles-changed | ||
| if: ${{needs.dockerfiles-changed.outputs.base_ottr_changed == 'true'}} | ||
| uses: ./.github/workflows/docker-test.yml | ||
|
Check failure on line 68 in .github/workflows/pull_request.yml
|
||
| with: | ||
| directory: base_ottr | ||
| tag: jhudsl/base_ottr | ||
| secrets: | ||
| GH_PAT: ${{ secrets.GH_PAT }} | ||
| build-ottrpal: | ||
| name: Build ottrpal image | ||
| needs: dockerfiles-changed | ||
| if: ${{needs.dockerfiles-changed.outputs.ottrpal_changed == 'true'}} | ||
| uses: ./.github/workflows/docker-test.yml | ||
| with: | ||
| directory: ottrpal | ||
| tag: jhudsl/ottrpal | ||
| secrets: | ||
| GH_PAT: ${{ secrets.GH_PAT }} | ||
| build-bioconductor: | ||
| name: Build bioconductor image | ||
| needs: dockerfiles-changed | ||
| if: ${{needs.dockerfiles-changed.outputs.bioconductor_changed == 'true'}} | ||
| uses: ./.github/workflows/docker-test.yml | ||
| with: | ||
| directory: bioconductor | ||
| tag: jhudsl/ottr_bioconductor | ||
| secrets: | ||
| GH_PAT: ${{ secrets.GH_PAT }} | ||
| build-python: | ||
| name: Build python image | ||
| needs: dockerfiles-changed | ||
| if: ${{needs.dockerfiles-changed.outputs.python_changed == 'true'}} | ||
| uses: ./.github/workflows/docker-test.yml | ||
| with: | ||
| directory: ottr_python | ||
| tag: jhudsl/ottr_python | ||
| secrets: | ||
| GH_PAT: ${{ secrets.GH_PAT }} | ||
| build-quarto: | ||
| name: Build quarto ottr image | ||
| needs: dockerfiles-changed | ||
| if: ${{needs.dockerfiles-changed.outputs.quarto_changed == 'true'}} | ||
| uses: ./.github/workflows/docker-test.yml | ||
| with: | ||
| directory: ottr_quarto | ||
| tag: jhudsl/ottr_quarto | ||
| secrets: | ||
| GH_PAT: ${{ secrets.GH_PAT }} | ||
