Name		Name	Last commit message	Last commit date
Latest commit History 189 Commits
__pycache__		__pycache__
docs		docs
.gitignore		.gitignore
LICENSE.md		LICENSE.md
README.md		README.md
allen2cit.py		allen2cit.py
allen2itksnap.py		allen2itksnap.py
allen_download.py		allen_download.py
atlas.py		atlas.py
atlas2lesion.py		atlas2lesion.py
atlas_inter_observer.jinja		atlas_inter_observer.jinja
atlas_intra_observer.jinja		atlas_intra_observer.jinja
atlas_lesion_analysis.py		atlas_lesion_analysis.py
atlas_montage.sh		atlas_montage.sh
atlas_report.py		atlas_report.py
atlas_summary.jinja		atlas_summary.jinja
avg_inter_observer.py		avg_inter_observer.py
cit2mni.sh		cit2mni.sh
create_mask.py		create_mask.py
dice.py		dice.py
fs_all_vols.py		fs_all_vols.py
fs_aseg_vols.py		fs_aseg_vols.py
fs_deface.sh		fs_deface.sh
fs_mkeditpack.sh		fs_mkeditpack.sh
fs_roi_overlay.m		fs_roi_overlay.m
fs_tissuemasks.py		fs_tissuemasks.py
fsedit		fsedit
harvardoxford_merge_labels.py		harvardoxford_merge_labels.py
harvardoxford_nodes.py		harvardoxford_nodes.py
interp_labels.py		interp_labels.py
interp_labels_a3.py		interp_labels_a3.py
label_volumes.py		label_volumes.py
merge_labels.py		merge_labels.py
midspace_T1.sh		midspace_T1.sh
midspace_T1T2.sh		midspace_T1T2.sh
mirror.py		mirror.py
mirror_warp_apply.sh		mirror_warp_apply.sh
mirror_warp_calc.sh		mirror_warp_calc.sh
nifti2jpg.py		nifti2jpg.py
nifti2png.py		nifti2png.py
pool_labels.py		pool_labels.py
prob2cifti.sh		prob2cifti.sh
prob2det.sh		prob2det.sh
prob_bilat2hemi.py		prob_bilat2hemi.py
prob_label_overlays.py		prob_label_overlays.py
prob_label_roi.py		prob_label_roi.py
prob_label_vol_info.py		prob_label_vol_info.py
prob_label_volumes.py		prob_label_volumes.py
prob_or.py		prob_or.py
prob_weighted_metric.py		prob_weighted_metric.py
probabilistic.py		probabilistic.py
remap_labels.py		remap_labels.py
resample		resample
segment.py		segment.py
separate_labels.py		separate_labels.py
smooth_labels.py		smooth_labels.py
sobel.py		sobel.py
srf2obj		srf2obj
template_subsample.py		template_subsample.py
tmp2ind_T1.sh		tmp2ind_T1.sh
tmp2ind_T1T2.sh		tmp2ind_T1T2.sh
vtk2obj		vtk2obj

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atlaskit

Tools for working with deterministic and probabilistic anatomic atlas labels.

See the wiki for documentation (https://github.com/jmtyszka/atlaskit/wiki)

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