This package provides annotations for Illumina methylation EPIC array v2.0. The data is based on the file https://support.illumina.com/content/dam/illumina-support/documents/downloads/productfiles/methylationepic/MethylationEPIC%20v2%20Files.zip from https://support.illumina.com/array/array_kits/infinium-methylationepic-beadchip-kit/downloads.html.
When using with the minfi package, you can manually set the "annotation" element by providing the suffix (removing the string "IlluminaHumanMethylationEPICv2anno."):
RGset = read.metharray.exp(...)
# explained in the IlluminaHumanMethylationEPICv2manifest package
annotation(RGset)["array"] = "IlluminaHumanMethylationEPICv2"
annotation(RGset)["annotation"] = "20a1.hg38"BiocManager::install("jokergoo/IlluminaHumanMethylationEPICv2anno.20a1.hg38")
# or
remotes::install_github("jokergoo/IlluminaHumanMethylationEPICv2anno.20a1.hg38")Artistic-2.0