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added data source for cell renaming
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jonathanspeh committed Aug 5, 2024
1 parent 0159e61 commit 4d06838
Showing 1 changed file with 67 additions and 0 deletions.
67 changes: 67 additions & 0 deletions data/cell_types.csv
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method;method_name;general_name
quantiseq;B cell;B_cells
quantiseq;Macrophage M1;macrophages_M1
quantiseq;Macrophage M2;macrophages_M2
quantiseq;Monocyte;monocytes
quantiseq;Neutrophil;neutrophils
quantiseq;NK cell;NK_cells
quantiseq;T cell CD4+ (non-regulatory);T_CD4_non_regs
quantiseq;T cell CD8+;T_cells_CD8
quantiseq;T cell regulatory (Tregs);T_regs
quantiseq;Myeloid dendritic cell;conventional_dendritic_cells
quantiseq;uncharacterized cell;uncharacterised
epic;B cell;B_cells
epic;T cell CD4+;T_cells_CD4
epic;T cell CD8+;T_cells_CD8
epic;Monocyte;monocytes
epic;NK cell;NK_cells
epic;Neutrophil;neutrophils
epic;uncharacterized cell;uncharacterised
abis;Monocytes.C;monocytes_conventional
abis;NK;NK_cells
abis;T.CD8.Memory;T_cells_CD8_memory
abis;T.CD4.Naive;T_cells_CD4_naive
abis;T.CD8.Naive;T_cells_CD8_naive
abis;B.Naive;B_cells_naive
abis;T.CD4.Memory;T_cells_CD4_memory
abis;MAIT;MAIT
abis;T.gd.Vd2;T_cells_gd
abis;Neutrophils.LD;neutrophils
abis;T.gd.non.Vd2;T_cells_gd
abis;Basophils.LD;basophils
abis;Monocytes.NC.I;monocytes_non_conventional
abis;B.Memory;B_cells_memory
abis;mDCs;conventional_dendritic_cells
abis;pDCs;lymphoid_dendritic_cells
abis;Plasmablasts;plasmablasts
cibersort;B.cells.naive;B_cells_naive
cibersort;B.cells.memory;B_cells_memory
cibersort;Plasma.cells;Plasma_cells
cibersort;T.cells.CD8;T_cells_CD8
cibersort;T.cells.CD4.naive;T_cells_CD4_naive
cibersort;T.cells.CD4.memory.resting;T_cells_CD4_memory_resting
cibersort;T.cells.CD4.memory.activated;T_cells_CD4_memory_activated
cibersort;T.cells.follicular.helper;T_cells_FH
cibersort;T.cells.regulatory..Tregs.;T_regs
cibersort;T.cells.gamma.delta;T_cells_gd
cibersort;NK.cells.resting;NK_cells_resting
cibersort;NK.cells.activated;NK_cells_activated
cibersort;Monocytes;monocytes
cibersort;Macrophages.M0;macrophages_M0
cibersort;Macrophages.M1;macrophages_M1
cibersort;Macrophages.M2;macrophages_M2
cibersort;Dendritic.cells.resting;conventional_dendritic_cells_resting
cibersort;Dendritic.cells.activated;conventional_dendritic_cells_activated
cibersort;Mast.cells.resting;mast_cells_resting
cibersort;Mast.cells.activated;mast_cells_activated
cibersort;Eosinophils;eosinophils
cibersort;Neutrophils;neutrophils
terekhova_coarse;NK cells;NK_cells
terekhova_coarse;B cells;B_cells
terekhova_coarse;CD4+ T cells;T_cells_CD4
terekhova_coarse;Myeloid cells;myeloid_cells
terekhova_coarse;TRAV1-2- CD8+ T cells;T_cells_CD8
terekhova_coarse;gd T cells;T_cells_gd
terekhova_coarse;MAIT cells;MAIT
terekhova_coarse;DN T cells;T_cells_DN
terekhova_coarse;Progenitor cells;progenitor_cells

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