Biomedical Sciences Program - University of California San Diego (UCSD)
Instructor: Emily Wheeler (ecwheele@ucsd.edu)
Instructor: Ryan Marina (rmarina@ucsd.edu)
Lecturer: Dave Gorkin (dgorkin@ucsd.edu)
Lecturer: Eric Van Nostrand (elvannostrand@ucsd.edu)
Lectures will all be held in CMME room 2047. See below for daily schedule.
One homework will be assigned on Friday and due on Monday. Details of the assignment coming soon.
| Day | Date | Time | Topic | Lecture |
|---|---|---|---|---|
| 0 | Pre-CLASS | Setup TSCC accounts | ||
| Wednesday | 9/27/17 | 9A - 1P | Sequencing Applications Lecture (Dave Gorkin) and Intro to Unix | |
| Thursday | 9/28/27 | 9A - 1P | Downloading Data, Fastqc, Alignment | |
| Friday | 9/29/17 | 9A - 1P | Alignment Recap, Samtools, Gene Quantification | |
| Monday | 10/2/17 | 9A - 1P | Jupyter Notebooks, DESeq2 | |
| Tuesday | 10/3/17 | 9A - 1P | RNA Applications Lecutre (Eric Van Nostrand) and Python Demo | |
| Wednesday | 10/4/17 | 9A - 1P | Gene Pattern |
| Day | Date | Time | Location | Hosting |
|---|---|---|---|---|
| Thursday | 9/28/27 | 4P - 6P | The Lounge (old Cafe Vita) | Ryan M |
| Sunday | 10/1/17 | 1P - 3P | Mesa Nueva | Emily + Krystyna |
| Tuesday | 10/2/17 | 6P - 8P | Regents Pizza | Emily |
| Thursday | 10/3/17 | 4P - 6P | Leichtag Lobby | Josh + Ryan G |
| Sunday | 10/4/17 | 1P - 3P | Mesa Nueva | Krystyna |
Details to come: