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Prepare for BioConductor submission #96

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jr-leary7 opened this issue Jun 19, 2023 · 3 comments
Open

Prepare for BioConductor submission #96

jr-leary7 opened this issue Jun 19, 2023 · 3 comments
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CI/CD & distribution continuous integration & development documentation Improvements or additions to documentation

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@jr-leary7 jr-leary7 added documentation Improvements or additions to documentation CI/CD & distribution continuous integration & development labels Jun 19, 2023
@jr-leary7 jr-leary7 self-assigned this Jun 19, 2023
jr-leary7 added a commit that referenced this issue Jun 19, 2023
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Added NEWS file -- necessary for #96
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jr-leary7 added a commit that referenced this issue Jun 19, 2023
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updated package metadata -- related to #91 and #96
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  • need to switch parallel backend from doParallel to BiocParallel

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jr-leary7 commented Oct 6, 2023 •
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  • need to add my & Rhonda's ORCIDs to the DESCRIPTION file
  • Must include ./inst/CITATION file after preprint is up
  • Need a vignette that follows BiocStyle vignette guidelines
  • Must pass BiocCheck in addition to R CMD CHECK (add a README badge for this as well)
  • Need .Rd documentation file for any included datasets
  • BiocParallel backend is "recommended" (unsure how strict that requirement is), though apparently they support foreach loops using BiocParallel::DoParParam() ...
  • recommended not to use set.seed() internally but i feel like it's somewhat necessary ...

@jr-leary7 jr-leary7 mentioned this issue Oct 10, 2023
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jr-leary7 added a commit that referenced this issue Oct 19, 2023
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prepping for BioConductor submission -- addresses #96
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jr-leary7 added a commit that referenced this issue Nov 12, 2023
@jr-leary7
added citation -- related to #96
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jr-leary7 added a commit that referenced this issue Nov 12, 2023
@jr-leary7
added BioConductor check github action -- related to #96
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jr-leary7 added a commit that referenced this issue Nov 12, 2023
@jr-leary7
Added docs for bioconductor submission -- related to #96
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jr-leary7 commented Sep 30, 2024 •
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  • need to switch versioning to 0.99.x prior to submission
  • need to be able to pass BiocCheckGitClone() in addition to BiocCheck()

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