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1. FlowClus FlowClus Public

   Filters and denoises pyrosequenced amplicons

   C 4 2

2. DMRfinder DMRfinder Public

   Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data

   Python 27 8

3. NGmerge NGmerge Public

   Merging paired-end reads and removing adapters

   C 45 15

4. Genrich Genrich Public

   Detecting sites of genomic enrichment

   C 189 27