This page contains information relevant to the NEU workshop for MED-oligotyping and Anvi'o held at the Marine Science Center Nahant, MA
Agenda:
Day 1: Mon Oct 30
9:00 – 10:00 MED-Oligotyping discussion
10:00 – 11:00 Unix crash course and tutorial
11:00 – 12:00 real world examples. How to interpret MED output
12:00 – 1:00 Continue to work through our example data and eat lunch
1:00 – 2:00 Introduction to Anvi’o
2:00 – 3:00 Creating a contigs database and loading it with data
3:00 – exhaustion Anvi’o metagenomics workflow – binning, refining, and summary
Day 2: Tues Oct 31
9:00 – 12:00
Review of day1 and any sticky points.
Analyzing SNVs
12:00 – 1:00 lunch and thoughts on SNVs
1:00 – 2: 00 Pangenomics
2:00 – 3:00 Phylogenomics
3:00 – 4:00 Combining ‘omics Data
4:00 – 5:00 Interactive Data Types
5:00 – exhaustion Anvi server