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SAMsift 0.2.2 #14

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Oct 11, 2017
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2 changes: 2 additions & 0 deletions .gitignore
Original file line number Diff line number Diff line change
Expand Up @@ -2,6 +2,8 @@ README.html
README.sh
*.sam
*.bam
!test.sam
!test.bam

# Byte-compiled / optimized / DLL files
__pycache__/
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4 changes: 2 additions & 2 deletions Makefile
Original file line number Diff line number Diff line change
Expand Up @@ -5,7 +5,7 @@ SAMS=./samsift/samsift.py

.SECONDARY:

all: readme tests/test.bam
all: readme tests/tests/test.bam

clean:
rm -fr build/ dist/ samsift/__pycache__ samsift.egg-info
Expand All @@ -16,7 +16,7 @@ clean:
pypi:
/usr/bin/env python3 setup.py sdist bdist_wheel upload

tests/test.bam: tests/test.sam
tests/tests/test.bam: tests/tests/test.sam
samtools view -b "$<" > "$@"

readme: rst html
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2 changes: 1 addition & 1 deletion README.rst
Original file line number Diff line number Diff line change
Expand Up @@ -84,7 +84,7 @@ Command-line parameters
.. code-block::
Program: samsift (advanced filtering and tagging of SAM/BAM alignments using Python expressions)
Version: 0.2.1
Version: 0.2.2
Author: Karel Brinda <kbrinda@hsph.harvard.edu>
Usage: samsift.py [-i FILE] [-o FILE] [-f PY_EXPR] [-c PY_CODE] [-m STR]
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