SAMsift 0.2.5

Fixes

• Don't modify SAM headers in order to avoid problems with the novel PySAM API

SAMsift 0.2.3

First Zenodo release.

SAMsift 0.2.2

Improvements

• Optimization (5x speed-up for simple filters).

SAMsift 0.2.1

New

• Add samsift-norm-sam (normalization of SAM file to facilitate their comparison).

Fixes

• Fix a bug in the internal cache (keeping old tags).

SAMsift 0.2.0

New

• Add an initialization parameter (-0).
• Add the PG tag to the output.
• Add modes of handling errors.
• Add support for Python 3.2-3.4.
• Add multiple examples of SAMsift usage.
• Add soft-clipped versions of variables (SEQs, QUALs, and QUALsa).

Improvements

• Support simultaneously both old and new PySam versions.
• Test the entire package using Travis.

Fix

• Fix a major bug with parsing command-line arguments containing spaces.
• Fix many other bugs.

SAMsift 0.1.0

The first public release.