Dynamical Modeling of Biological Systems Cell-Cycle Oscillator and Mitotic Trigger Wave-driven Spatiotemporal Coordination Project Summary Report [PDF]. Code Modules. Analysis Code Snapshot [Matlab LiveScript PDF]. Experiments and Analyses EX09: One-dimensional diffusion analysis. PS01: Protein Phosphorylation Switch. PS02: Collin's Switch. PS03: Hudspeth's Hair Bundle Oscillations. PS04: Quality of Stochastic Oscillations (simulated using Gillespie's Algorithm). PS05: Turing Systems.