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SRST2 v0.1.7 - Short Read Sequence Typing for Bacterial Pathogens
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@katholt katholt released this 12 Jan 05:48
· 107 commits to master since this release
v0.1.7
1964671

Updates in v0.1.7

  1. Use the following environment variables to specify your prefered samtools and bowtie2 executables (thanks to Ben Taylor for this):
  • SRST2_SAMTOOLS
  • SRST2_BOWTIE2
  • SRST2_BOWTIE2_BUILD
  1. Added mcr1, the plasmid-borne colisting resistance gene to the included ARG-Annot-based resistance gene DB (ARGannot.r1.fasta)
  2. Fixed a problem with writing consensus files that occurred when a directory structure was specified using --output (bug introduced in v0.1.6)
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