A napari plugin for use with the tyssue library
Example video of apoptosis demo simulation created based on the apoptosis demo from tyssue-demo.
Example video of apoptosis demo simulation created based on work under revision by Suzanne group at U Toulouse entitled "Epithelio-mesenchymal transition generates an apico-basal driving force required for tissue remodeling" available here.
This napari plugin was generated with Cookiecutter using @napari's cookiecutter-napari-plugin template.
You are better off using conda. You will need pytables, and ideally CGAL.
You can install napari-tyssue via pip:
pip install napari-tyssue
To install latest development version :
pip install git+https://github.com/kephale/napari-tyssue.git
Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.
Distributed under the terms of the BSD-3 license, "napari-tyssue" is free and open source software
If you encounter any problems, please file an issue along with a detailed description.