failed to run `@example` block in src/generated/examples/multilevel_transmon.md:75-81 ```@example multilevel_transmon # create the problem prob = UnitarySmoothPulseProblem(sys, op, T, Δt; a_bound=a_bound) # solve the problem solve!(prob; max_iter=50) ``` exception = MethodError: no method matching initialize_unitary_trajectory(::EmbeddedOperator, ::Int64, ::Float64, ::Int64, ::Vector{Float64}, ::Vector{Float64}; free_time::Bool, Δt_bounds::Tuple{Float64, Float64}, geodesic::Bool, bound_unitary::Bool, drive_derivative_σ::Float64, a_guess::Nothing, system::QuantumSystem, rollout_integrator::typeof(exp)) Closest candidates are: initialize_unitary_trajectory(::Union{EmbeddedOperator, AbstractMatrix{<:Number}}, ::Int64, ::Real, ::Int64, !Matched::NamedTuple{anames, <:Tuple{Vararg{Union{Tuple{AbstractVector{R}, AbstractVector{R}}, AbstractVector{R}} where R<:Real}}} where anames; U_init, n_derivatives, geodesic, bound_unitary, free_time, Δt_bounds, drive_derivative_σ, a_guess, system, rollout_integrator, Ũ⃗_keys, a_keys) @ QuantumCollocation ~/work/QuantumCollocation.jl/QuantumCollocation.jl/src/trajectory_initialization.jl:211 Stacktrace: [1] UnitarySmoothPulseProblem(system::QuantumSystem, operator::EmbeddedOperator, T::Int64, Δt::Float64; free_time::Bool, init_trajectory::Nothing, a_bound::Float64, a_bounds::Vector{Float64}, a_guess::Nothing, dda_bound::Float64, dda_bounds::Vector{Float64}, Δt_min::Float64, Δt_max::Float64, drive_derivative_σ::Float64, Q::Float64, R::Float64, R_a::Float64, R_da::Float64, R_dda::Float64, leakage_suppression::Bool, R_leakage::Float64, max_iter::Int64, linear_solver::String, ipopt_options::Options{Float64}, constraints::Vector{AbstractConstraint}, timesteps_all_equal::Bool, verbose::Bool, integrator::Symbol, rollout_integrator::typeof(exp), bound_unitary::Bool, control_norm_constraint::Bool, control_norm_constraint_components::Nothing, control_norm_R::Nothing, geodesic::Bool, pade_order::Int64, autodiff::Bool, jacobian_structure::Bool, hessian_approximation::Bool, blas_multithreading::Bool, kwargs::@kwargs{}) @ QuantumCollocation.ProblemTemplates ~/work/QuantumCollocation.jl/QuantumCollocation.jl/src/problem_templates/unitary_smooth_pulse_problem.jl:133 [2] top-level scope @ multilevel_transmon.md:77 [3] eval @ ./boot.jl:385 [inlined] [4] #58 @ ~/.julia/packages/Documenter/1HwWe/src/expander_pipeline.jl:754 [inlined] [5] cd(f::Documenter.var"#58#60"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [6] (::Documenter.var"#57#59"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/1HwWe/src/expander_pipeline.jl:753 [7] (::IOCapture.var"#4#7"{DataType, Documenter.var"#57#59"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:161 [8] with_logstate(f::Function, logstate::Any) @ Base.CoreLogging ./logging.jl:515 [9] with_logger @ ./logging.jl:627 [inlined] [10] capture(f::Documenter.var"#57#59"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer) @ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:158 [11] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/1HwWe/src/expander_pipeline.jl:752

failed to run `@example` block in src/generated/examples/multilevel_transmon.md:85-87 ```@example multilevel_transmon println("Fidelity: ", unitary_fidelity(prob; subspace=op.subspace_indices)) ``` exception = UndefVarError: `prob` not defined Stacktrace: [1] top-level scope @ multilevel_transmon.md:86 [2] eval @ ./boot.jl:385 [inlined] [3] #58 @ ~/.julia/packages/Documenter/1HwWe/src/expander_pipeline.jl:754 [inlined] [4] cd(f::Documenter.var"#58#60"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [5] (::Documenter.var"#57#59"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/1HwWe/src/expander_pipeline.jl:753 [6] (::IOCapture.var"#4#7"{DataType, Documenter.var"#57#59"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:161 [7] with_logstate(f::Function, logstate::Any) @ Base.CoreLogging ./logging.jl:515 [8] with_logger @ ./logging.jl:627 [inlined] [9] capture(f::Documenter.var"#57#59"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer) @ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:158 [10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/1HwWe/src/expander_pipeline.jl:752

failed to run `@example` block in src/generated/examples/multilevel_transmon.md:91-93 ```@example multilevel_transmon plot_unitary_populations(prob; fig_size=(900, 700)) ``` exception = UndefVarError: `prob` not defined Stacktrace: [1] top-level scope @ multilevel_transmon.md:92 [2] eval @ ./boot.jl:385 [inlined] [3] #58 @ ~/.julia/packages/Documenter/1HwWe/src/expander_pipeline.jl:754 [inlined] [4] cd(f::Documenter.var"#58#60"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [5] (::Documenter.var"#57#59"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/1HwWe/src/expander_pipeline.jl:753 [6] (::IOCapture.var"#4#7"{DataType, Documenter.var"#57#59"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:161 [7] with_logstate(f::Function, logstate::Any) @ Base.CoreLogging ./logging.jl:515 [8] with_logger @ ./logging.jl:627 [inlined] [9] capture(f::Documenter.var"#57#59"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer) @ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:158 [10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/1HwWe/src/expander_pipeline.jl:752

failed to run `@example` block in src/generated/examples/multilevel_transmon.md:99-112 ```@example multilevel_transmon # create the a leakage suppression problem, initializing with the previous solution prob_leakage = UnitarySmoothPulseProblem(sys, op, T, Δt; a_bound=a_bound, leakage_suppression=true, R_leakage=1e-1, a_guess=prob.trajectory.a ) # solve the problem solve!(prob_leakage; max_iter=50) ``` exception = UndefVarError: `prob` not defined Stacktrace: [1] top-level scope @ multilevel_transmon.md:102 [2] eval @ ./boot.jl:385 [inlined] [3] #58 @ ~/.julia/packages/Documenter/1HwWe/src/expander_pipeline.jl:754 [inlined] [4] cd(f::Documenter.var"#58#60"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [5] (::Documenter.var"#57#59"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/1HwWe/src/expander_pipeline.jl:753 [6] (::IOCapture.var"#4#7"{DataType, Documenter.var"#57#59"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:161 [7] with_logstate(f::Function, logstate::Any) @ Base.CoreLogging ./logging.jl:515 [8] with_logger @ ./logging.jl:627 [inlined] [9] capture(f::Documenter.var"#57#59"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer) @ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:158 [10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/1HwWe/src/expander_pipeline.jl:752

failed to run `@example` block in src/generated/examples/multilevel_transmon.md:116-118 ```@example multilevel_transmon println("Fidelity: ", unitary_fidelity(prob_leakage; subspace=op.subspace_indices)) ``` exception = UndefVarError: `prob_leakage` not defined Stacktrace: [1] top-level scope @ multilevel_transmon.md:117 [2] eval @ ./boot.jl:385 [inlined] [3] #58 @ ~/.julia/packages/Documenter/1HwWe/src/expander_pipeline.jl:754 [inlined] [4] cd(f::Documenter.var"#58#60"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [5] (::Documenter.var"#57#59"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/1HwWe/src/expander_pipeline.jl:753 [6] (::IOCapture.var"#4#7"{DataType, Documenter.var"#57#59"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:161 [7] with_logstate(f::Function, logstate::Any) @ Base.CoreLogging ./logging.jl:515 [8] with_logger @ ./logging.jl:627 [inlined] [9] capture(f::Documenter.var"#57#59"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer) @ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:158 [10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/1HwWe/src/expander_pipeline.jl:752

failed to run `@example` block in src/generated/examples/multilevel_transmon.md:122-124 ```@example multilevel_transmon plot_unitary_populations(prob_leakage; fig_size=(900, 700)) ``` exception = UndefVarError: `prob_leakage` not defined Stacktrace: [1] top-level scope @ multilevel_transmon.md:123 [2] eval @ ./boot.jl:385 [inlined] [3] #58 @ ~/.julia/packages/Documenter/1HwWe/src/expander_pipeline.jl:754 [inlined] [4] cd(f::Documenter.var"#58#60"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [5] (::Documenter.var"#57#59"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/1HwWe/src/expander_pipeline.jl:753 [6] (::IOCapture.var"#4#7"{DataType, Documenter.var"#57#59"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:161 [7] with_logstate(f::Function, logstate::Any) @ Base.CoreLogging ./logging.jl:515 [8] with_logger @ ./logging.jl:627 [inlined] [9] capture(f::Documenter.var"#57#59"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer) @ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:158 [10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/1HwWe/src/expander_pipeline.jl:752

failed to run `@example` block in src/generated/quickstart.md:26-61 ```@example quickstart using NamedTrajectories using QuantumCollocation # set time parameters T = 100 Δt = 0.1 # use the exported gate dictionary to get the gates we need σx = get_gate(:X) σy = get_gate(:Y) σz = get_gate(:Z) # define drift and drive Hamiltonians H_drift = 0.5 * σz H_drives = [σx, σy] # define target unitary U_goal = σx # set bound on the drive a_bound = 1.0 # build the problem prob = UnitarySmoothPulseProblem( H_drift, H_drives, U_goal, T, Δt; a_bound=a_bound, ) # solve the problem solve!(prob; max_iter=30) ``` exception = MethodError: no method matching initialize_unitary_trajectory(::Matrix{ComplexF64}, ::Int64, ::Float64, ::Int64, ::Vector{Float64}, ::Vector{Float64}; free_time::Bool, Δt_bounds::Tuple{Float64, Float64}, geodesic::Bool, bound_unitary::Bool, drive_derivative_σ::Float64, a_guess::Nothing, system::QuantumSystem, rollout_integrator::typeof(exp)) Closest candidates are: initialize_unitary_trajectory(::Union{EmbeddedOperator, AbstractMatrix{<:Number}}, ::Int64, ::Real, ::Int64, !Matched::NamedTuple{anames, <:Tuple{Vararg{Union{Tuple{AbstractVector{R}, AbstractVector{R}}, AbstractVector{R}} where R<:Real}}} where anames; U_init, n_derivatives, geodesic, bound_unitary, free_time, Δt_bounds, drive_derivative_σ, a_guess, system, rollout_integrator, Ũ⃗_keys, a_keys) @ QuantumCollocation ~/work/QuantumCollocation.jl/QuantumCollocation.jl/src/trajectory_initialization.jl:211 Stacktrace: [1] UnitarySmoothPulseProblem(system::QuantumSystem, operator::Matrix{ComplexF64}, T::Int64, Δt::Float64; free_time::Bool, init_trajectory::Nothing, a_bound::Float64, a_bounds::Vector{Float64}, a_guess::Nothing, dda_bound::Float64, dda_bounds::Vector{Float64}, Δt_min::Float64, Δt_max::Float64, drive_derivative_σ::Float64, Q::Float64, R::Float64, R_a::Float64, R_da::Float64, R_dda::Float64, leakage_suppression::Bool, R_leakage::Float64, max_iter::Int64, linear_solver::String, ipopt_options::Options{Float64}, constraints::Vector{AbstractConstraint}, timesteps_all_equal::Bool, verbose::Bool, integrator::Symbol, rollout_integrator::typeof(exp), bound_unitary::Bool, control_norm_constraint::Bool, control_norm_constraint_components::Nothing, control_norm_R::Nothing, geodesic::Bool, pade_order::Int64, autodiff::Bool, jacobian_structure::Bool, hessian_approximation::Bool, blas_multithreading::Bool, kwargs::@kwargs{}) @ QuantumCollocation.ProblemTemplates ~/work/QuantumCollocation.jl/QuantumCollocation.jl/src/problem_templates/unitary_smooth_pulse_problem.jl:133 [2] UnitarySmoothPulseProblem(::Matrix{ComplexF64}, ::Vector{Matrix{ComplexF64}}, ::Matrix{ComplexF64}, ::Vararg{Any}; kwargs::@kwargs{a_bound::Float64}) @ QuantumCollocation.ProblemTemplates ~/work/QuantumCollocation.jl/QuantumCollocation.jl/src/problem_templates/unitary_bang_bang_problem.jl:172 [3] top-level scope @ quickstart.md:50 [4] eval @ ./boot.jl:385 [inlined] [5] #58 @ ~/.julia/packages/Documenter/1HwWe/src/expander_pipeline.jl:754 [inlined] [6] cd(f::Documenter.var"#58#60"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [7] (::Documenter.var"#57#59"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/1HwWe/src/expander_pipeline.jl:753 [8] (::IOCapture.var"#4#7"{DataType, Documenter.var"#57#59"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:161 [9] with_logstate(f::Function, logstate::Any) @ Base.CoreLogging ./logging.jl:515 [10] with_logger @ ./logging.jl:627 [inlined] [11] capture(f::Documenter.var"#57#59"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer) @ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture

failed to run `@example` block in src/generated/quickstart.md:65-67 ```@example quickstart println("Final fidelity: ", unitary_fidelity(prob)) ``` exception = UndefVarError: `prob` not defined Stacktrace: [1] top-level scope @ quickstart.md:66 [2] eval @ ./boot.jl:385 [inlined] [3] #58 @ ~/.julia/packages/Documenter/1HwWe/src/expander_pipeline.jl:754 [inlined] [4] cd(f::Documenter.var"#58#60"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [5] (::Documenter.var"#57#59"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/1HwWe/src/expander_pipeline.jl:753 [6] (::IOCapture.var"#4#7"{DataType, Documenter.var"#57#59"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:161 [7] with_logstate(f::Function, logstate::Any) @ Base.CoreLogging ./logging.jl:515 [8] with_logger @ ./logging.jl:627 [inlined] [9] capture(f::Documenter.var"#57#59"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer) @ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:158 [10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/1HwWe/src/expander_pipeline.jl:752

failed to run `@example` block in src/generated/quickstart.md:71-73 ```@example quickstart plot(prob.trajectory, [:Ũ⃗, :a]) ``` exception = UndefVarError: `prob` not defined Stacktrace: [1] top-level scope @ quickstart.md:72 [2] eval @ ./boot.jl:385 [inlined] [3] #58 @ ~/.julia/packages/Documenter/1HwWe/src/expander_pipeline.jl:754 [inlined] [4] cd(f::Documenter.var"#58#60"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [5] (::Documenter.var"#57#59"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/1HwWe/src/expander_pipeline.jl:753 [6] (::IOCapture.var"#4#7"{DataType, Documenter.var"#57#59"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:161 [7] with_logstate(f::Function, logstate::Any) @ Base.CoreLogging ./logging.jl:515 [8] with_logger @ ./logging.jl:627 [inlined] [9] capture(f::Documenter.var"#57#59"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer) @ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:158 [10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/1HwWe/src/expander_pipeline.jl:752

failed to run `@example` block in src/generated/quickstart.md:83-97 ```@example quickstart # final fidelity constraint final_fidelity = 0.99 # weight on the minimum time objective D = 10.0 prob_min_time = UnitaryMinimumTimeProblem( prob; final_fidelity=final_fidelity, D=D ) solve!(prob_min_time; max_iter=30) ``` exception = UndefVarError: `prob` not defined Stacktrace: [1] top-level scope @ quickstart.md:90 [2] eval @ ./boot.jl:385 [inlined] [3] #58 @ ~/.julia/packages/Documenter/1HwWe/src/expander_pipeline.jl:754 [inlined] [4] cd(f::Documenter.var"#58#60"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [5] (::Documenter.var"#57#59"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/1HwWe/src/expander_pipeline.jl:753 [6] (::IOCapture.var"#4#7"{DataType, Documenter.var"#57#59"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:161 [7] with_logstate(f::Function, logstate::Any) @ Base.CoreLogging ./logging.jl:515 [8] with_logger @ ./logging.jl:627 [inlined] [9] capture(f::Documenter.var"#57#59"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer) @ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:158 [10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/1HwWe/src/expander_pipeline.jl:752