Clean up citations.

paper.bib

@@ -9,7 +9,7 @@ @article{2012_optimal_stability_polynomials
 }
 
 
-@article{2009_monotonicity-glms,
+@article{2009_monotonicity,
 	Author = {Ketcheson, David I.},
 	Journal = {Mathematics of Computation},
 	Month = sep,
@@ -25,7 +25,7 @@ @inproceedings{parsani-eccomas
 	Author = {Parsani, M and Ketcheson, D I and Deconinck, W},
 	Booktitle = {Proceedings of the European Congress on Computational Methods in Applied Sciences and Engineering},
 	Month = {September},
-	Title = {Explicit Runge-Kutta schemes for the spectral difference method applied to wave propagation problems},
+	Title = {Explicit {R}unge-{K}utta schemes for the spectral difference method applied to wave propagation problems},
 	Year = {2012}}
 
 
@@ -34,7 +34,7 @@ @inproceedings{Parsani_finnish
 	Booktitle = {Proceedings of the 11th Finnish Mechanics Days},
 	Month = {November},
 	Pages = {1--5},
-	Title = {{Optimized low-order explicit Runge-Kutta schemes for high- order spectral difference method}},
+	Title = {Optimized low-order explicit {R}unge-{K}utta schemes for high-order spectral difference method},
 	Year = {2012}}
 
 @article{2013_sd_erk,
@@ -57,7 +57,7 @@ @article{2014_ssp_rkdg
 	Year = {2014}}
 
 @article{conde2017implicit,
-  title={Implicit and implicit--explicit strong stability preserving Runge--Kutta methods with high linear order},
+  title={Implicit and implicit--explicit strong stability preserving {R}unge--{K}utta methods with high linear order},
   author={Conde, Sidafa and Gottlieb, Sigal and Grant, Zachary J and Shadid, John N},
   journal={Journal of Scientific Computing},
   volume={73},
@@ -87,7 +87,7 @@ @article{christlieb2016explicit
 }
 
 @article{gottlieb2015optimal,
-  title={Optimal explicit strong stability preserving Runge--Kutta methods with high linear order and optimal nonlinear order},
+  title={Optimal explicit strong stability preserving {R}unge--{K}utta methods with high linear order and optimal nonlinear order},
   author={Gottlieb, Sigal and Grant, Zachary and Higgs, Daniel},
   journal={Mathematics of Computation},
   volume={84},
@@ -108,7 +108,7 @@ @article{grant2019strong
 }
 
 @inproceedings{reynoso2017strong,
-  title={Strong stability preserving sixth order two-derivative Runge--Kutta methods},
+  title={Strong stability preserving sixth order two-derivative {R}unge--{K}utta methods},
   author={Reynoso, Gustavo Franco and Gottlieb, Sigal and Grant, Zachary J},
   booktitle={AIP Conference Proceedings},
   volume={1863},
@@ -178,7 +178,7 @@ @article{2011_dwssp
 	Month = may,
 	Number = {4},
 	Pages = {1649},
-	Title = {{Step Sizes for Strong Stability Preservation with Downwind-Biased Operators}},
+	Title = {Step Sizes for Strong Stability Preservation with Downwind-Biased Operators},
 	Volume = {49},
 	Year = {2011}}
 
@@ -204,7 +204,7 @@ @article{2017_msrk
 
 
 @article{conde2018embedded,
-  title={Embedded error estimation and adaptive step-size control for optimal explicit strong stability preserving Runge--Kutta methods},
+  title={Embedded error estimation and adaptive step-size control for optimal explicit strong stability preserving {R}unge--{K}utta methods},
   author={Conde, Sidafa and Fekete, Imre and Shadid, John N},
   journal={arXiv preprint arXiv:1806.08693},
   year={2018}

paper.md

@@ -12,15 +12,15 @@ authors:
   - name: David I. Ketcheson^[Corresponding author.]
     orcid: 0000-0002-1212-126X
     affiliation: 1
-  - name: Hendrik Ranocha
-    orcid: 0000-0002-3456-2277
-    affiliation: 1
   - name: Matteo Parsani
     orcid: 0000-0001-7300-1280
     affiliation: 1
   - name: Aron Ahmadia
     orcid: 0000-0002-2573-2481
     affiliation: 2
+  - name: Hendrik Ranocha
+    orcid: 0000-0002-3456-2277
+    affiliation: 1
 affiliations:
  - name: King Abdullah University of Science and Technology
    index: 1
@@ -117,7 +117,7 @@ involving downwind Runge-Kutta methods and low-storage Runge-Kutta methods.
 
 Whereas the previous two subpackages are fairly general-purpose tools,
 this package solves a very specific set of problems described in
-[@].  Specifically, the provided routines determine the cofficients of
+[@2009_monotonicity].  Specifically, the provided routines determine the cofficients of
 multistep methods (including classes of general linear methods) with the
 largest possible SSP coefficient (also known
 as radius of absolute monotonicity).  The corresponding optimization problem
@@ -137,17 +137,17 @@ more on their analysis.  A common workflow involves generating new methods with
 Some of the research projects that have made use of `RK-Opt` include development of:
 
  - SSP Runge-Kutta methods 
-   [@2008_explicit_ssp;@2009_implicit_ssp;@2013_effective_order_ssp;gottlieb2015optimal]
+   [@2008_explicit_ssp;@2009_implicit_ssp;@gottlieb2015optimal]
  - SSP linear multistep methods [@2009_monotonicity]
  - SSP general linear methods [@2011_tsrk;@2017_msrk]
  - SSP IMEX Runge-Kutta methods [@conde2017implicit]
  - Low-storage Runge-Kutta methods [@2010_LSRK]
  - Optimal Runge-Kutta stability polynomials [@2012_optimal_stability_polynomials]
  - Additive and downwind SSP Runge-Kutta methods [@2011_dwssp;@2018_perturbations]
- - Optimal Runge-Kutta methods for specific PDE semi-discretizations [@parsani-eccomas;Parsani_finnish;2013_sd_erk;2014_ssp_rkdg]
- - Embedded pairs for Runge-Kutta methods [@horvathembedded;@conde2018embedded]
+ - Optimal Runge-Kutta methods for specific PDE semi-discretizations [@parsani-eccomas;@Parsani_finnish;@2013_sd_erk;@2014_ssp_rkdg]
+ - Embedded pairs for Runge-Kutta methods [@conde2018embedded]
  - Runge-Kutta methods with high weak stage order [@2018_wso]
- - SSP multistage, multiderivative methods [@christlieb2016explicit;grant2019strong;reynoso2017strong]
+ - SSP multistage, multiderivative methods [@christlieb2016explicit;@grant2019strong;@reynoso2017strong]
 
 As can be seen from this list, applications have mostly stemmed from the
 work of the main developer's research group, but have since expanded