updates to go from stitched tif stack directly to ome.zarr #21
Workflow file for this run
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--- | |
name: Lint and test workflow | |
on: | |
push: | |
branches: ['*', '!push-action/*'] | |
pull_request: | |
branches: ['*', '!push-action/*'] | |
jobs: | |
quality: | |
name: Lint code | |
if: github.event.pull_request.merged == false | |
runs-on: ubuntu-latest | |
steps: | |
- name: Setup Python environment | |
uses: khanlab/actions/.github/actions/action-setup_task-installPyProject@v0.3.6 | |
with: | |
python-version: '3.11' | |
- name: snakemake lint | |
run: poetry run snakemake --lint | |
- name: snakefmt | |
run: poetry run snakefmt --check workflow | |
test: | |
runs-on: ubuntu-latest | |
needs: [quality] | |
strategy: | |
matrix: | |
python-version: ['3.11'] | |
steps: | |
- name: Setup Python environments | |
uses: khanlab/actions/.github/actions/action-setup_task-installPyProject@v0.3.6 | |
with: | |
python-version: ${{ matrix.python-version }} | |
install-library: true | |
- name: Integration dry-run test | |
run: poetry run snakemake -np |