Deployed e32ec07 with MkDocs version: 1.6.1

khanlab · Sep 12, 2024 · 1eaed8c · 1eaed8c
commit 1eaed8c
Show file tree

Hide file tree

Showing 49 changed files with 8,550 additions and 0 deletions.
diff --git a/.nojekyll b/.nojekyll
diff --git a/404.html b/404.html
@@ -0,0 +1,350 @@
+
+<!doctype html>
+<html lang="en" class="no-js">
+  <head>
+
+      <meta charset="utf-8">
+      <meta name="viewport" content="width=device-width,initial-scale=1">
+
+
+
+
+
+
+      <link rel="icon" href="/assets/images/favicon.png">
+      <meta name="generator" content="mkdocs-1.6.1, mkdocs-material-9.5.34">
+
+
+
+        <title>SPIMprep</title>
+
+
+
+      <link rel="stylesheet" href="/assets/stylesheets/main.35f28582.min.css">
+
+
+        <link rel="stylesheet" href="/assets/stylesheets/palette.06af60db.min.css">
+
+
+
+
+
+
+
+
+
+
+
+
+        <link rel="preconnect" href="https://fonts.gstatic.com" crossorigin>
+        <link rel="stylesheet" href="https://fonts.googleapis.com/css?family=Roboto:300,300i,400,400i,700,700i%7CRoboto+Mono:400,400i,700,700i&display=fallback">
+        <style>:root{--md-text-font:"Roboto";--md-code-font:"Roboto Mono"}</style>
+
+
+
+    <script>__md_scope=new URL("/",location),__md_hash=e=>[...e].reduce(((e,_)=>(e<<5)-e+_.charCodeAt(0)),0),__md_get=(e,_=localStorage,t=__md_scope)=>JSON.parse(_.getItem(t.pathname+"."+e)),__md_set=(e,_,t=localStorage,a=__md_scope)=>{try{t.setItem(a.pathname+"."+e,JSON.stringify(_))}catch(e){}}</script>
+
+
+
+
+
+
+  </head>
+
+
+
+
+
+
+
+
+
+    <body dir="ltr" data-md-color-scheme="default" data-md-color-primary="teal" data-md-color-accent="purple">
+
+
+    <input class="md-toggle" data-md-toggle="drawer" type="checkbox" id="__drawer" autocomplete="off">
+    <input class="md-toggle" data-md-toggle="search" type="checkbox" id="__search" autocomplete="off">
+    <label class="md-overlay" for="__drawer"></label>
+    <div data-md-component="skip">
+
+    </div>
+    <div data-md-component="announce">
+
+    </div>
+
+
+
+
+<header class="md-header" data-md-component="header">
+  <nav class="md-header__inner md-grid" aria-label="Header">
+    <a href="/." title="SPIMprep" class="md-header__button md-logo" aria-label="SPIMprep" data-md-component="logo">
+
+
+  <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M12 8a3 3 0 0 0 3-3 3 3 0 0 0-3-3 3 3 0 0 0-3 3 3 3 0 0 0 3 3m0 3.54C9.64 9.35 6.5 8 3 8v11c3.5 0 6.64 1.35 9 3.54 2.36-2.19 5.5-3.54 9-3.54V8c-3.5 0-6.64 1.35-9 3.54"/></svg>
+
+    </a>
+    <label class="md-header__button md-icon" for="__drawer">
+
+      <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M3 6h18v2H3zm0 5h18v2H3zm0 5h18v2H3z"/></svg>
+    </label>
+    <div class="md-header__title" data-md-component="header-title">
+      <div class="md-header__ellipsis">
+        <div class="md-header__topic">
+          <span class="md-ellipsis">
+            SPIMprep
+          </span>
+        </div>
+        <div class="md-header__topic" data-md-component="header-topic">
+          <span class="md-ellipsis">
+
+
+
+          </span>
+        </div>
+      </div>
+    </div>
+
+
+        <form class="md-header__option" data-md-component="palette">
+
+
+
+
+    <input class="md-option" data-md-color-media="" data-md-color-scheme="default" data-md-color-primary="teal" data-md-color-accent="purple"  aria-label="Switch to dark mode"  type="radio" name="__palette" id="__palette_0">
+
+      <label class="md-header__button md-icon" title="Switch to dark mode" for="__palette_1" hidden>
+        <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M17 6H7c-3.31 0-6 2.69-6 6s2.69 6 6 6h10c3.31 0 6-2.69 6-6s-2.69-6-6-6m0 10H7c-2.21 0-4-1.79-4-4s1.79-4 4-4h10c2.21 0 4 1.79 4 4s-1.79 4-4 4M7 9c-1.66 0-3 1.34-3 3s1.34 3 3 3 3-1.34 3-3-1.34-3-3-3"/></svg>
+      </label>
+
+
+
+
+
+    <input class="md-option" data-md-color-media="" data-md-color-scheme="slate" data-md-color-primary="teal" data-md-color-accent="lime"  aria-label="Switch to light mode"  type="radio" name="__palette" id="__palette_1">
+
+      <label class="md-header__button md-icon" title="Switch to light mode" for="__palette_0" hidden>
+        <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M17 7H7a5 5 0 0 0-5 5 5 5 0 0 0 5 5h10a5 5 0 0 0 5-5 5 5 0 0 0-5-5m0 8a3 3 0 0 1-3-3 3 3 0 0 1 3-3 3 3 0 0 1 3 3 3 3 0 0 1-3 3"/></svg>
+      </label>
+
+
+</form>
+
+
+
+      <script>var palette=__md_get("__palette");if(palette&&palette.color){if("(prefers-color-scheme)"===palette.color.media){var media=matchMedia("(prefers-color-scheme: light)"),input=document.querySelector(media.matches?"[data-md-color-media='(prefers-color-scheme: light)']":"[data-md-color-media='(prefers-color-scheme: dark)']");palette.color.media=input.getAttribute("data-md-color-media"),palette.color.scheme=input.getAttribute("data-md-color-scheme"),palette.color.primary=input.getAttribute("data-md-color-primary"),palette.color.accent=input.getAttribute("data-md-color-accent")}for(var[key,value]of Object.entries(palette.color))document.body.setAttribute("data-md-color-"+key,value)}</script>
+
+
+
+
+  </nav>
+
+</header>
+
+    <div class="md-container" data-md-component="container">
+
+
+
+
+
+<nav class="md-tabs" aria-label="Tabs" data-md-component="tabs">
+  <div class="md-grid">
+    <ul class="md-tabs__list">
+
+
+
+
+
+    <li class="md-tabs__item">
+      <a href="/." class="md-tabs__link">
+
+
+
+
+  SPIMprep
+
+      </a>
+    </li>
+
+
+
+
+
+
+
+    <li class="md-tabs__item">
+      <a href="/workflow/" class="md-tabs__link">
+
+
+
+
+  Workflow
+
+      </a>
+    </li>
+
+
+
+    </ul>
+  </div>
+</nav>
+
+
+
+      <main class="md-main" data-md-component="main">
+        <div class="md-main__inner md-grid">
+
+
+
+              <div class="md-sidebar md-sidebar--primary" data-md-component="sidebar" data-md-type="navigation" >
+                <div class="md-sidebar__scrollwrap">
+                  <div class="md-sidebar__inner">
+
+
+
+
+
+
+
+
+<nav class="md-nav md-nav--primary md-nav--lifted md-nav--integrated" aria-label="Navigation" data-md-level="0">
+  <label class="md-nav__title" for="__drawer">
+    <a href="/." title="SPIMprep" class="md-nav__button md-logo" aria-label="SPIMprep" data-md-component="logo">
+
+
+  <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M12 8a3 3 0 0 0 3-3 3 3 0 0 0-3-3 3 3 0 0 0-3 3 3 3 0 0 0 3 3m0 3.54C9.64 9.35 6.5 8 3 8v11c3.5 0 6.64 1.35 9 3.54 2.36-2.19 5.5-3.54 9-3.54V8c-3.5 0-6.64 1.35-9 3.54"/></svg>
+
+    </a>
+    SPIMprep
+  </label>
+
+  <ul class="md-nav__list" data-md-scrollfix>
+
+
+
+
+
+
+
+    <li class="md-nav__item">
+      <a href="/." class="md-nav__link">
+
+
+  <span class="md-ellipsis">
+    SPIMprep
+  </span>
+
+
+      </a>
+    </li>
+
+
+
+
+
+
+
+
+
+    <li class="md-nav__item">
+      <a href="/workflow/" class="md-nav__link">
+
+
+  <span class="md-ellipsis">
+    Workflow
+  </span>
+
+
+      </a>
+    </li>
+
+
+
+  </ul>
+</nav>
+                  </div>
+                </div>
+              </div>
+
+
+
+
+            <div class="md-content" data-md-component="content">
+              <article class="md-content__inner md-typeset">
+
+  <h1>404 - Not found</h1>
+
+              </article>
+            </div>
+
+
+  <script>var tabs=__md_get("__tabs");if(Array.isArray(tabs))e:for(var set of document.querySelectorAll(".tabbed-set")){var labels=set.querySelector(".tabbed-labels");for(var tab of tabs)for(var label of labels.getElementsByTagName("label"))if(label.innerText.trim()===tab){var input=document.getElementById(label.htmlFor);input.checked=!0;continue e}}</script>
+
+<script>var target=document.getElementById(location.hash.slice(1));target&&target.name&&(target.checked=target.name.startsWith("__tabbed_"))</script>
+        </div>
+
+          <button type="button" class="md-top md-icon" data-md-component="top" hidden>
+
+  <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M13 20h-2V8l-5.5 5.5-1.42-1.42L12 4.16l7.92 7.92-1.42 1.42L13 8z"/></svg>
+  Back to top
+</button>
+
+      </main>
+
+        <footer class="md-footer">
+
+  <div class="md-footer-meta md-typeset">
+    <div class="md-footer-meta__inner md-grid">
+      <div class="md-copyright">
+
+
+    Made with
+    <a href="https://squidfunk.github.io/mkdocs-material/" target="_blank" rel="noopener">
+      Material for MkDocs
+    </a>
+
+</div>
+
+        <div class="md-social">
+
+
+
+
+
+
+
+
+    <a href="https://github.com/khanlab/SPIMprep" target="_blank" rel="noopener" title="github.com" class="md-social__link">
+      <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 480 512"><!--! Font Awesome Free 6.6.0 by @fontawesome - https://fontawesome.com License - https://fontawesome.com/license/free (Icons: CC BY 4.0, Fonts: SIL OFL 1.1, Code: MIT License) Copyright 2024 Fonticons, Inc.--><path d="M186.1 328.7c0 20.9-10.9 55.1-36.7 55.1s-36.7-34.2-36.7-55.1 10.9-55.1 36.7-55.1 36.7 34.2 36.7 55.1M480 278.2c0 31.9-3.2 65.7-17.5 95-37.9 76.6-142.1 74.8-216.7 74.8-75.8 0-186.2 2.7-225.6-74.8-14.6-29-20.2-63.1-20.2-95 0-41.9 13.9-81.5 41.5-113.6-5.2-15.8-7.7-32.4-7.7-48.8 0-21.5 4.9-32.3 14.6-51.8 45.3 0 74.3 9 108.8 36 29-6.9 58.8-10 88.7-10 27 0 54.2 2.9 80.4 9.2 34-26.7 63-35.2 107.8-35.2 9.8 19.5 14.6 30.3 14.6 51.8 0 16.4-2.6 32.7-7.7 48.2 27.5 32.4 39 72.3 39 114.2m-64.3 50.5c0-43.9-26.7-82.6-73.5-82.6-18.9 0-37 3.4-56 6-14.9 2.3-29.8 3.2-45.1 3.2-15.2 0-30.1-.9-45.1-3.2-18.7-2.6-37-6-56-6-46.8 0-73.5 38.7-73.5 82.6 0 87.8 80.4 101.3 150.4 101.3h48.2c70.3 0 150.6-13.4 150.6-101.3m-82.6-55.1c-25.8 0-36.7 34.2-36.7 55.1s10.9 55.1 36.7 55.1 36.7-34.2 36.7-55.1-10.9-55.1-36.7-55.1"/></svg>
+    </a>
+
+
+
+
+
+
+
+
+    <a href="https://twitter.com/neuroak" target="_blank" rel="noopener" title="twitter.com" class="md-social__link">
+      <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 512 512"><!--! Font Awesome Free 6.6.0 by @fontawesome - https://fontawesome.com License - https://fontawesome.com/license/free (Icons: CC BY 4.0, Fonts: SIL OFL 1.1, Code: MIT License) Copyright 2024 Fonticons, Inc.--><path d="M459.37 151.716c.325 4.548.325 9.097.325 13.645 0 138.72-105.583 298.558-298.558 298.558-59.452 0-114.68-17.219-161.137-47.106 8.447.974 16.568 1.299 25.34 1.299 49.055 0 94.213-16.568 130.274-44.832-46.132-.975-84.792-31.188-98.112-72.772 6.498.974 12.995 1.624 19.818 1.624 9.421 0 18.843-1.3 27.614-3.573-48.081-9.747-84.143-51.98-84.143-102.985v-1.299c13.969 7.797 30.214 12.67 47.431 13.319-28.264-18.843-46.781-51.005-46.781-87.391 0-19.492 5.197-37.36 14.294-52.954 51.655 63.675 129.3 105.258 216.365 109.807-1.624-7.797-2.599-15.918-2.599-24.04 0-57.828 46.782-104.934 104.934-104.934 30.213 0 57.502 12.67 76.67 33.137 23.715-4.548 46.456-13.32 66.599-25.34-7.798 24.366-24.366 44.833-46.132 57.827 21.117-2.273 41.584-8.122 60.426-16.243-14.292 20.791-32.161 39.308-52.628 54.253"/></svg>
+    </a>
+
+</div>
+
+    </div>
+  </div>
+</footer>
+
+    </div>
+    <div class="md-dialog" data-md-component="dialog">
+      <div class="md-dialog__inner md-typeset"></div>
+    </div>
+
+
+    <script id="__config" type="application/json">{"base": "/", "features": ["navigation.tabs", "navigation.sections", "toc.integrate", "navigation.top", "search.suggest", "search.highlight", "content.tabs.link", "content.code.annotation", "content.code.copy"], "search": "/assets/javascripts/workers/search.07f07601.min.js", "translations": {"clipboard.copied": "Copied to clipboard", "clipboard.copy": "Copy to clipboard", "search.result.more.one": "1 more on this page", "search.result.more.other": "# more on this page", "search.result.none": "No matching documents", "search.result.one": "1 matching document", "search.result.other": "# matching documents", "search.result.placeholder": "Type to start searching", "search.result.term.missing": "Missing", "select.version": "Select version"}}</script>
+
+
+      <script src="/assets/javascripts/bundle.56dfad97.min.js"></script>
+
+
+  </body>
+</html>
diff --git a/assets/images/favicon.png b/assets/images/favicon.png
diff --git a/assets/javascripts/bundle.56dfad97.min.js b/assets/javascripts/bundle.56dfad97.min.js