chunk size (pre bigstitcher) wasn't set correctly

Needs to be 128x128x128 or 256x256x256 instead of 1x4096x4096. The latter causes memory issues as described in #47
khanlab · Sep 14, 2024 · a30b26d · a30b26d
1 parent e32ec07
commit a30b26d
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/workflow/rules/flatfield_corr.smk b/workflow/rules/flatfield_corr.smk
@@ -79,7 +79,7 @@ rule apply_basic_flatfield_corr:
             allow_missing=True,
         ),
     params:
-        out_chunks=config["ome_zarr"]["rechunk_size"],
+        out_chunks=(128,128,128)
     output:
         zarr=temp(
             directory(