Version 1.0.5

Version 1.0.5 published on CRAN, 22 February 2024

• Remove /usr/lib linking in Makevars files
• Also remove -L"." -lpthread -lstdc++ -lm. Not necessary.

Version 1.0.4

Added scale.center argument to dotPlot() to plot more intuitive and correct avg. expression levels.

Version 1.0.3

Version 1.0.3 published on CRAN, 12 March 2023

• Added checkPackageInstalled
• Added saveDeAsJson
• Bugfix for dotPlot
• Removed 'CXX_STD = CXX11' from the Makevars files, and removed 'SystemRequirements: C++11'

Version 1.0.2

Version 1.0.2 published on CRAN, 23 August 2022

• Fixed HTML5 validation issue requested by CRAN given R 4.2.0
• Removed a few if conditionals with 'class()'
• Set mc.allow.recursive=TRUE by default in 'plapply()'.

Version 1.0.1

Version 1.0.1 published on CRAN, 12 December 2021

• Clarified roxygen2 documentation, palette arguments
• Fixed l.max parameter in smoothSignalOnGraph, added validation for graph connectivity
• extendMatrix doesn't drop dimensions anymore
• Fixed processing of mc.allow.recursive for n.cores=1 in plapply
• Export heatFilter()

Version 1.0.0

Version 1.0.0 published on CRAN, 7 October 2021

• The package does not rely on OpenMP anymore, all function use C++11 threads
• Better processing of corner cases in extendMatrix and smoothSignalOnGraph
• Fixed bug in val2ggcol with all color values <= 0: it now produces blue palette instead of read-blue
• Fixed extendMatrix() so that always subsets on col.names

Version 0.1.3

Version 0.1.3 published on CRAN, 5 May 2021

Changed
-- colSumByFactor() now requires factor input and returns a named matrix. Bug fix.
-- Parallel cpp functions can now be accessed from other cpp packages by including sccore_par.hpp

Added:
--- collapseCellsByType() from conos

Version 0.1.2

Added

• val2col function that translates values into colors
• added smoothSignalOnGraph function that re-implements graph filtering from the pygsp package
• Rcpp functions runTaskParallelFor, runTaskParallel and class ThreadProgress for parallel loops with progress bar using C++11 threads
• plapply now uses pbmcapply
• roxygen2 revisions

Changed

• plot.na can accept numeric values now. If plot.na passed a numeric value below 0, the NA symbols are plotted below the cells. Otherwise if values >=0, they're plotted above the cells.
• plapply now accepts fail.on.error parameter that is FALSE by default
• Small bug fixes

Version 0.1.2 published on CRAN, 23 Feb 2021: https://cran.r-project.org/web/packages/sccore/index.html

Version 0.1.1

• Fully functional on CRAN, all binaries build.