updated and rebuilt the package

kholsman · Oct 4, 2024 · 5019953 · 5019953
1 parent c57faab
commit 5019953
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Showing 29 changed files with 907 additions and 4 deletions.
diff --git a/.DS_Store b/.DS_Store
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -12,7 +12,7 @@ Description: futR() is a generic Rpackage for fitting recruitment models to indi
 License: GPL-2
 Encoding: UTF-8
 LazyData: true
-RoxygenNote: 7.2.3
+RoxygenNote: 7.3.1
 Imports: 
     Matrix,
     TMB,

diff --git a/NAMESPACE b/NAMESPACE
@@ -1,2 +1,30 @@
 # Generated by roxygen2: do not edit by hand
 
+export(AICselection)
+export(a)
+export(estRec)
+export(getFit)
+export(get_SSB_shape)
+export(get_cov_shape)
+export(get_interaction_mat)
+export(get_model)
+export(list)
+export(makeDat)
+export(makeMap)
+export(makefutR_data)
+export(map)
+export(maplist)
+export(plot_par_pdf)
+export(plot_rs)
+export(predict_futR)
+export(profile_covars)
+export(profile_ssb)
+export(recompile)
+export(rmd2md)
+export(runRecMod)
+export(theme_hrbrmstr_an)
+export(theme_kir)
+export(theme_kir_an)
+export(values)
+export(vec2list)
+export(with)
diff --git a/R/05_load_data.R b/R/05_load_data.R
@@ -5,9 +5,6 @@
 # updated 2020
 # ----------------------------------------
 
-
-  # load ggplot theme:
-  source("R/sub_scripts/THEMES_GGPLOT.r")
 
   #_______________________________________
   # 1.3 load data

diff --git a/data/.DS_Store b/data/.DS_Store
diff --git a/man/AICselection.Rd b/man/AICselection.Rd
diff --git a/man/dirlist.Rd b/man/dirlist.Rd
diff --git a/man/estRec.Rd b/man/estRec.Rd
diff --git a/man/futR.Rd b/man/futR.Rd
diff --git a/man/getFit.Rd b/man/getFit.Rd
diff --git a/man/get_SSB_shape.Rd b/man/get_SSB_shape.Rd
diff --git a/man/get_cov_shape.Rd b/man/get_cov_shape.Rd
diff --git a/man/get_interaction_mat.Rd b/man/get_interaction_mat.Rd
diff --git a/man/get_model.Rd b/man/get_model.Rd