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@kornl kornl released this 10 Aug 07:22
· 173 commits to master since this release
v0.8-9
cb01453

  • New function gMCP.extended, which mostly does the same as the old
    gMCP function, but separates more clearly between weighting scheme
    and the subsequent closed testing procedure (with possible shortcuts).
    See ?gMCP.extended for the documentation of this new function.

  • gMCP.extended can take any weighted test function as argument.
    The trimmed one-sided Simes test for two hypotheses and the weighted
    Simes test for specified subsets (and Bonferroni otherwise) are two
    new weighted test functions provided by this package.
    See ?bonferroni.trimmed.simes.test and ?simes.on.subsets.test for details.

  • When a graph is saved, the user now can decide whether p-values and
    chosen test (including possible correlation matrix) should also be
    saved as attributes attached to the graph. If such a graph is loaded
    the user can choose whether he wants to restore p-values and/or test
    information.

  • Saving a graph as PNG image file opens a dialog with the following
    options and a live preview: Color, transparent background, drawing
    of hypotheses names and weights, drawing of edge weights and node
    radius.

  • Node size can be changed (e.g. for longer hypotheses names).

  • Fixed some help documents not showing up as expected.

  • Added new help buttons in the GUI which directly open the relevant
    sections of the user manual.

  • Better layout for result window when large graphs or Simes test
    is used.

  • Function calcPower now also takes graphMCP objects.

  • Improved Edges

  • Fixed call of corMatWizard if only a matrix is given without names
    and dimensions.

  • Fixed confusing (but mostly not relevant) mix-up between NA and NaN
    during R/Java conversions.

  • Better handling of invalid LaTeX terms.

  • graph2latex gains argument 'fig.caption.short' for an optional short
    version of fig.caption for the list of figures.

  • Fixed logging errors/warnings when two different users used the gMCP
    GUI on the same system.

  • Improved dialog in case of errors.

  • Warning if R was compiled without shared library support and the
    graphical user interface will not be available due to missing JRI.

  • Lots of small interface improvements and documentation additions.

  • Extended RUnit tests

    144 files changed, 10027 insertions(+), 1106 deletions(-)

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