v0.4-0

• Added code for graph based MCPs with partial knowledge of the
  correlation structure from Florian Klinglmueller, who is now
  coauthor.

• New dependencies in this code: gtools and multcomp (and therefore
  also mvtnorm)

• gMCP has a new optional parameter "correlation".

• The new vignette "correlated.pdf" shows the new features.

• graphGUI Parameter grid is now 0 by default. This restores the last
  used grid value.

• Fractions instead of decimal numbers are shown in more places.

• Alpha values can be entered as R expression, e.g. "0.05/7".

• When the test phase is started in the GUI, you are asked, whether
  you have (partial) knowledge about the correlations between the
  tests.

• Better support for more than one GUI window in the same R session.

• All help files open correctly on windows machines - even with
  Java 5.0

  48 files changed, 278 insertions(+), 91 deletions(-)

v0.3-6

• Mainly a bug-fix release, since the GUI was often not responding
  in 0.3-5.

• C compiler is needed for building gMCP since the first C source file
  was added.

• When saving/loading graphs, reports or png/LaTeX files, the last
  directory is remembered.

• Adjusted p-values are now truncated and can not be bigger than one.

  36 files changed, 278 insertions(+), 495 deletions(-)

v0.3-5

• Unfortunately after release it was noted that the GUI was not
  responding in 0.3-5.

• New dependencies: MASS for MASS::fractions and PolynomF for polynoms
  in epsilon.

• Saving and loading of graphs to/from files.

• Method graphGUI has a new optional argument "pvalues" for loading
  p-values.

• Trying to show fractions in the GUI instead of decimal numbers

• Line width of graphs can be adjusted (line width 2 is now default)

• Use of antialiasing for nicer graphics

• Improvement of PNG exports

• Parameters for example graphs in GUI

• More RUnit tests

  40 files changed, 363 insertions(+), 406 deletions(-)

v0.3-4

• New functions: graph2matrix and matrix2graph

• Adjaceny matrix is shown and can be edited.

  38 files changed, 152 insertions(+), 134 deletions(-)

v0.3-3

• Be careful with epsilon edges (we never specified what exactly they
  are and how they should behave) and please wait for version 0.6
  which will handle them in a completely new way and will document it.
  Support for them is broken in this release.

• New example graph from Hommel et al. 2007.

• Inserted missing $ in LaTeX code output from graph2latex.

• Better automatic placement of edge labels.

• Options dialog in GUI.

• All doc files are accessible from the GUI menu.

• The GUI Locale object is always set to English - that way there is
  no decimal separator confusion etc.

• Edges with small weights are rendered better.

• Dialog that shows adjusted p-values with much better layout.

• New accompanying doc file: Description of Edges with Infinitesimal
  Small Epsilon Weights (unfinished). [Removed in 0.3-4]

• graph2latex has the same vertical orientation as the GUI.

• Option whether we want to still show already rejected nodes or not.

• Option whether graphs should be colored or not.

• Update in the GUI for confidence intervals to avoid a confused user.

• Removed function adjPValues from public API - adjusted p-values are
  now calculated in the gMCP call.

  33 files changed, 269 insertions(+), 282 deletions(-)

v0.3-2

• Renaming of parameter in simConfint: "confintF" is now "confint"

• Updated confidence interval dialog (but still in development).

• Confidence intervals for t- and normal distribution can be
  calculated based on the p-values and point estimates in most cases.

• Reduced the package size.

• Further improved capabilities for bug reporting.

• We need rJava in version 0.8-3 or later.

• Vignette can be shown from inside the GUI.

• Function "setAlpha".

  36 files changed, 242 insertions(+), 110 deletions(-)

v0.3-1

• The GUI has a menu bar.

• Improved capabilities for bug reporting. All information that is
  sent is also shown.

• Workaround for a problem with the graph package when a node has no
  out-going edges.

• Numbers are now accepted with "." and "," as decimal points

• A newly created edge is now by default an epsilon edge.

• Edges from one node to itself (loops) are not allowed any more.

• Start button is only enabled, if the graph has any nodes.

• Bug-fix regarding epsilon edges.

  25 files changed, 186 insertions(+), 113 deletions(-)

v0.3-0

• Major API changes (mostly gsrmtp replaced by gMCP - but now the API
  should stay relatively stable).

• GraphGUI can now also be called directly on objects of class
  graphMCP, like graphGUI(rejectNode(graph, "H1")).

• Small GUI bug-fix for placing edge labels while in any other zoom
  level than 100%.

• Completely separated nodes (which only occur in sub-optimal testing
  procedures) are now handled correctly.

• If the graph has no nodeRenderInfo available when the GUI is called,
  the edges are placed in a circle.

• Deducer support if installed and loaded.

  42 files changed, 980 insertions(+), 930 deletions(-)

v0.2-4

• After some alpha and beta releases on r-forge this is the first beta
  version on CRAN.
• We support: Graphs with epsilon edges, confidence intervals,
  adjusted p-values.

v0.8-3

• If a correlation matrix is selected in the main window, the same
  correlation matrix is loaded per default in the power analysis dialog.

• To comply with CRAN policies the function graphGUI has now an argument
  envir to specify in which environment the object graph is located and/or
  it should be saved (default is the global environment).

  41 files changed, 422 insertions(+), 140 deletions(-)