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Update applyconfig-gen for pacakges where group and dir differ in name
It is possible that package paths might differ from the group name, see https://github.com/openshift/api/blob/master/operatorcontrolplane/v1alpha1/doc.go notice that pacakge name is `operatorcontrolplane` whereas the group is `controlplane.operator...`. This confuses the generator since it tries to extrapolate the name of the package based on the group name. Whereas the ImportTracker can properly recognize the import path. This leads to cyclical imports in packages where the group name is different from the actual import path. Kubernetes-commit: 4d1dd9cd07912190cffc68c54c17395391c8b4d1
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