# try to fix

kullrich · Nov 6, 2024 · 2a33365 · 2a33365
1 parent 8f48fba
commit 2a33365
Show file tree

Hide file tree

Showing 4 changed files with 5 additions and 4 deletions.
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
@@ -2,7 +2,8 @@ image: rocker/r-base:latest
 
 before_script:
   - apt-get update
-  - apt-get -y install pandoc r-cran-devtools r-cran-testthat r-cran-curl r-bioc-biostrings
+  - apt-get -y install pandoc r-cran-devtools r-cran-testthat r-cran-curl
+  - R -e "install.packages('BiocManager'); BiocManager::install(version = "3.20")"
   - R -e "dir(); getwd(); sessionInfo(); install.packages('pkgdown'); devtools::install()"
   - R -e "setwd(paste0(find.package('CRBHits'), '/extdata/')); system(paste0('unzip last-1595.zip')); setwd(paste0(find.package('CRBHits'), '/extdata/last-1595/')); system('make')"
   - R -e "setwd(paste0(find.package('CRBHits'), '/extdata/')); system(paste0('tar -xvf KaKs_Calculator2.0_src.tar.gz')); setwd(paste0(find.package('CRBHits'), '/extdata/KaKs_Calculator2.0_src/src/')); system('make clean'); system('make')"

diff --git a/DESCRIPTION b/DESCRIPTION
@@ -17,7 +17,7 @@ Depends:
   R (>= 4.4.0)
 Imports:
   Biostrings,
-  MSA2dist,
+  MSA2dist (>= 1.9.0),
   curl,
   doParallel,
   dplyr,

diff --git a/public/pkgdown.yml b/public/pkgdown.yml
@@ -4,4 +4,4 @@ pkgdown_sha: ~
 articles:
   V01CRBHitsBasicVignette: V01CRBHitsBasicVignette.html
   V02KaKsVignette: V02KaKsVignette.html
-last_built: 2024-11-06T17:58Z
+last_built: 2024-11-06T18:53Z
diff --git a/public/reference/rbh2dagchainer.html b/public/reference/rbh2dagchainer.html