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Collection of Suffix Array Construction Algorithms (SACAs)

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SACA Benchmark

This repository contains the following C/C++ implementations of suffix array construction algorithms (SACAs).

There now exists the project SACABench that contains most of these algorithms and allows to easliy build, run, and benchmark them.

Name Publication Author(s) Year License
BRP2 An Incomplex Algorithm for Fast Suffix Array Construction K.-B. Schürmann and J. Stoye 2005 GPL v2
DC3 Simple Linear Work Suffix Array Construction J. Kärkkäinen and P. Sanders 2003 n/a
deep-shallow Engineering a Lightweight Suffix Array Construction Algorithm G. Manzini and P. Ferragina 2002 GPL v2
gsaca Linear-time Suffix Sorting – A New Approach for Suffix Array Construction U. Baier 2016 MIT
libdivsufsort - Y. Mori 2011 MIT
qsufsort Faster Suffix Sorting N. J. Larsson and K. Sadakane 1999 own
sa-ds Two Efficient Algorithms for Linear Time Suffix Array Construction G. Nong 2012 n/a
sa-is Two Efficient Algorithms for Linear Time Suffix Array Construction G. Nong 2011 n/a
SACA-K Practical Linear-Time O(1)-Workspace Suffix Sorting for Constant Alphabets G. Nong 2011/13 n/a
sais-lite - Y. Mori 2010 MIT
gsa-is Inducing Enhanced Suffix Arrays for String Collections F. A. Louza, S. Gog and G. P. Telles 2017 MIT
msufsort (version 4 is currently in development) M. Maniscalco 2017 MIT

Please note that all those files are licensed under their respective license (if available). I merely collected them to create a benchmark.

If you know of any other publicly available SACA please send me a mail.

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