Merge pull request #21 from kusterlab/20-handle-multiple-flanking-seq… #54
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| name: Unit tests | |
| on: [push] | |
| jobs: | |
| run: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| python-version: ['3.9'] | |
| poetry-version: [1.5.1] | |
| os: [ubuntu-latest, macos-latest, windows-latest] | |
| env: | |
| OS: ${{ matrix.os }} | |
| PYTHON: ${{ matrix.python-version }} | |
| steps: | |
| - uses: actions/checkout@master | |
| - name: Setup Python | |
| uses: actions/setup-python@master | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Run image | |
| uses: abatilo/actions-poetry@v2.0.0 | |
| with: | |
| poetry-version: ${{ matrix.poetry-version }} | |
| - name: Installing package | |
| run: poetry install | |
| - name: Generate coverage report | |
| run: | | |
| poetry run pytest --cov=psite_annotation --cov-report xml --cov-report term -s tests/unit_tests | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| directory: ./coverage/reports/ | |
| env_vars: OS,PYTHON | |
| fail_ci_if_error: true | |
| files: ./coverage.xml,!./cache | |
| flags: unittests | |
| name: codecov-umbrella | |
| verbose: true |