Support IGNORE_ERRORS when scanning from pyarrow/pandas #4646
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Codecov ReportAttention: Patch coverage is
Additional details and impacted files@@ Coverage Diff @@
## master #4646 +/- ##
=======================================
Coverage 86.50% 86.51%
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Files 1369 1372 +3
Lines 57955 57999 +44
Branches 7203 7209 +6
=======================================
+ Hits 50136 50175 +39
- Misses 7652 7657 +5
Partials 167 167 ☔ View full report in Codecov by Sentry. |
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Benchmark ResultMaster commit hash:
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ray6080
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Dec 19, 2024
CMakeLists.txt
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| @@ -317,7 +317,7 @@ add_subdirectory(third_party) | |||
| if(${BUILD_KUZU}) | |||
| add_definitions(-DKUZU_ROOT_DIRECTORY="${PROJECT_SOURCE_DIR}") | |||
| add_definitions(-DKUZU_CMAKE_VERSION="${CMAKE_PROJECT_VERSION}") | |||
| add_definitions(-DKUZU_EXTENSION_VERSION="0.7.0") | |||
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hmm Do we need to upgrade the extension version?
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I added a virtual function to TableFuncBindData which is inherited by some classes in the extensions (e.g. JSONScanBindData) so I probably need to bump the extension version.
That single change (me needing to export ScanBindData/TableFuncBindData) caused a bunch of dynamic casts in the macos extension test to fail due to the casted targets not being exported which is why I added all those KUZU_API` changes. I'm not completely sure why they showed up now and not before though.
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okay. We don't need to bump extension version manually in PRs now. The CI pipeline will handle this.
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This is a bit strange, as we have virtual function in TableFuncBindData previously. I wonder why we don't need to mark KUZU_API previously, but now. @acquamarin Can you also take a look at the KUZU_API changes in this PR?
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It probably because the only virtual method before is copy which is pure virtual (so the definitions are all in the child classes). The method I added has a default implementation so it actually needs to exported for child classes in the extensions to access.
| @@ -17,6 +18,7 @@ namespace kuzu { | |||
| PyArrowScanConfig::PyArrowScanConfig(const common::case_insensitive_map_t<Value>& options) { | |||
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I wonder why PyArrowScan and PandasScan have different ways to convert scanConfig. I need to take another look to see if we can unify them. but can you also take a look?
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I think the reason is that we don't support the pyarrow scan options (skipNum and limitNum) in pandas scan so before this PR we don't actually support any configuration for pandas scan. I could look into if it's doable to support those options in pandas scan and if it is I'll add the support and unify the config in a separate PR.
Benchmark ResultMaster commit hash:
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Benchmark ResultMaster commit hash:
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ray6080
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Dec 28, 2024
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Description
Adds support for the default
IGNORE_ERRORSbehaviour (skipping rows that trigger PK-related exceptions) when scanning from pandas/pyarrow.Fixes #4534
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