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1. broadinstitute/long-read-pipelines broadinstitute/long-read-pipelines Public

   Long read production pipelines

   Jupyter Notebook 142 24

2. mcveanlab/Corticall mcveanlab/Corticall Public

   Germline DNM caller based on LdBG assembly of pathogens

   Java 8 3

3. jts/bri jts/bri Public

   Bam Read Index - Extract alignments from a bam file by readname

   C 24 7

4. mccortex mccortex Public

   Forked from mcveanlab/mccortex

   Cortex on steroids: for larger populations with better assembly

   C

5. broadinstitute/longbow broadinstitute/longbow Public

   Annotation and segmentation of MAS-seq data

   Python 20 4

6. broadinstitute/hidive broadinstitute/hidive Public

   Rust