Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Run sage doc server for notebooks #2

Merged
merged 1 commit into from
Feb 17, 2023

Conversation

kwankyu
Copy link
Owner

@kwankyu kwankyu commented Feb 11, 2023

Fixes #5 issue 1

📚 Description

📝 Checklist

  • I have made sure that the title is self-explanatory and the description concisely explains the PR.
  • I have linked an issue or discussion.
  • I have created tests covering the changes.
  • I have updated the documentation accordingly.

⌛ Dependencies

@codecov
Copy link

codecov bot commented Feb 11, 2023

Codecov Report

Merging #2 (a1b7582) into develop (104dde9) will increase coverage by 0.02%.
The diff coverage is 77.77%.

❗ Current head a1b7582 differs from pull request most recent head f70aebf. Consider uploading reports for the commit f70aebf to get more accurate results

@@             Coverage Diff             @@
##           develop       #2      +/-   ##
===========================================
+ Coverage    88.58%   88.60%   +0.02%     
===========================================
  Files         2136     2136              
  Lines       396142   396148       +6     
===========================================
+ Hits        350919   351016      +97     
+ Misses       45223    45132      -91     
Impacted Files Coverage Δ
src/sage/repl/ipython_kernel/kernel.py 88.23% <71.42%> (-5.10%) ⬇️
src/sage/env.py 88.10% <100.00%> (+0.10%) ⬆️
src/sage/groups/generic.py 88.34% <0.00%> (-0.68%) ⬇️
src/sage/combinat/posets/posets.py 93.87% <0.00%> (-0.12%) ⬇️
src/sage/graphs/generators/random.py 92.12% <0.00%> (ø)
src/sage/graphs/generic_graph.py 89.12% <0.00%> (+0.09%) ⬆️
src/sage/graphs/digraph.py 92.70% <0.00%> (+0.12%) ⬆️
src/sage/doctest/forker.py 80.37% <0.00%> (+0.13%) ⬆️
src/sage/schemes/elliptic_curves/ell_generic.py 93.37% <0.00%> (+0.13%) ⬆️
src/sage/homology/chain_complex.py 89.31% <0.00%> (+0.14%) ⬆️
... and 21 more

📣 We’re building smart automated test selection to slash your CI/CD build times. Learn more

@kwankyu kwankyu force-pushed the fix/34794/run-doc-server-with-jupyter branch from dca7ef5 to 2c8d473 Compare February 15, 2023 04:54
@kwankyu kwankyu merged commit 56aabad into develop Feb 17, 2023
kwankyu added a commit that referenced this pull request Mar 15, 2023
* Improve camera positioning for threejs

* Changes to sagedoc, stopgap and superseded; one mass replacement

* Another mass replacement

* Another mass replacement

* Another replacement

* Another replacement

* Remove comment numbers

* Fix a couple of strays

* trac ticket -> github issue

* Change checksums back, fix meta-ticket

* Another mass replacement

* Another mass replacement

* Another mass replacement

* Manual fixes

* Small replacement

* Small replacement

* Fix typo

* Add github role to tox

* add explicit formulas to documentation of WeierstrassIsomorphism

* lift documentation from .__init__() to class and tweak

* add doctest for sagemath#20847

* add .torsion_basis() method to EllipticCurve_finite_field

* Revert "Remove comment numbers"

This reverts commit 27cdf3e.

* Revert changes to git_trac.rst

* Switch :github: to :issue:

* Switch from sage-prod to sage in attachment links

* Change trac_number to issue_number

* cross linked matrix method

* Add construction of strongly regular digraph

* A few manual fixes

* Another automatic change

* Undo a bunch of changes in the doc directory

* Another fix

* Try to fix sphinx problem

* Move comment tag inside

* allowing iterables as input

* Fix code style

* generalized fix

* converting iterables

* added is_supergreedy() function

* implemented diff algo, for borderline cases

* correcting function for disjoint set of points

* correcting function

* documentation changes

* minor chagnges

* fixing_failing_tests

* minor documentation correction

* Update linear_extensions.py

* corrected TeX maths in docstrings

* further fixes to supergreedy docstring

* Added Reference

* adding reference

* minor updates

* correcting documentation errors

* correct a wrong change to :trac:

* remove spurrious blank line

* another spurrious line removed

* compute matrix kernels modulo composites

* fix doctests

* docstring style tweak

* adding doctests

* correct the import location (duh...)

* adding colored permutation doctests

* doctests fixes

* replaced "Combining Caron"+c with one unicode character

* Updated SageMath version to 10.0.beta1

---------

Co-authored-by: Kwankyu Lee <ekwankyu@gmail.com>
Co-authored-by: David Roe <roed.math@gmail.com>
Co-authored-by: Lorenz Panny <lorenz@yx7.cc>
Co-authored-by: Marc Mezzarobba <marc@mezzarobba.net>
Co-authored-by: Tobias Diez <code@tobiasdiez.com>
Co-authored-by: Sandstorm831 <gargrohan138@gmail.com>
Co-authored-by: Rohan Garg <76916164+Sandstorm831@users.noreply.github.com>
Co-authored-by: Dima Pasechnik <dima@pasechnik.info>
Co-authored-by: Release Manager <release@sagemath.org>
kwankyu pushed a commit that referenced this pull request Mar 27, 2023
    
### 📚 Description

Trac branch `u/gh-collares/gap-gc` from sagemath#34701, now migrated to GitHub.
Currently based atop sagemath#35093; will rebase once that is merged.

The rest of the description below is copied from sagemath#34701:

A refactor in sagemath#27946 introduced "unprotected" (not surrounded by
`GAP_Enter`/`GAP_Leave`) `GAP_ValueGlobalVariable` calls. I believe this
might be a GC hazard, because after updating to GAP 4.12.1 I started
seeing aarch64 crashes on NixOS infrastructure such as:

```
#0  0x0000fffff79740e8 in wait4 ()
#1  0x0000fffff5dc6b78 in print_enhanced_backtrace ()
#2  0x0000fffff5dc8190 in sigdie ()
#3  0x0000fffff5dcb1c0 in cysigs_signal_handler ()
#4  0x0000fffff7ffb7cc in __kernel_rt_sigreturn ()
#5  0x0000ffff99a0bf28 in ConvString ()
#6  0x0000000000000000 in ?? ()
#7  0x0000000000000000 in ?? ()
#8  0x0000000000000000 in ?? ()
#9  0x0000ffff99989930 in Pr ()
#10 0x0000ffff9998aa18 in CloseOutput ()
#11 0x0000ffff99884828 in capture_stdout () at /build/sage-
src-9.7/pkgs/sagemath-standard/sage/libs/gap/element.pyx:154
...
```
I also see cases where `capture_stdout` throws errors such as
`sage.libs.gap.util.GAPError: Error, Length: <list> must be a list (not
the integer 255)` and then crashes. Both types of errors are fixed by
this ticket.

Note that I am nesting `GAP_Enter`/`GAP_Leave` calls because I didn't
remove the preexisting calls inside `capture_stdout`. That's because I
feared removing the innermost calls might create a new footgun (and I
believe nested `GAP_Enter`/`GAP_Leave` calls are explicitly supported),
but removing them should cause no problem. Removing them might even be
preferable for performance reasons, I don't know.

Fixes sagemath#34701

### 📝 Checklist

<!-- Put an `x` in all the boxes that apply. -->
<!-- If your change requires a documentation PR, please link it
appropriately -->
<!-- If you're unsure about any of these, don't hesitate to ask. We're
here to help! -->

- [x] I have made sure that the title is self-explanatory and the
description concisely explains the PR.
- [x] I have linked an issue or discussion.
- [ ] I have created tests covering the changes.
- [ ] I have updated the documentation accordingly.

### ⌛ Dependencies
<!-- List all open pull requests that this PR logically depends on -->
<!--
- #xyz: short description why this is a dependency
- #abc: ...
-->
- sagemath#35093: GAP 4.12.2 upgrade, which touches the same function and should
land first.
    
URL: sagemath#35114
Reported by: Mauricio Collares
Reviewer(s): Dima Pasechnik
kwankyu pushed a commit that referenced this pull request Mar 28, 2023
kwankyu pushed a commit that referenced this pull request Jul 2, 2023
kwankyu pushed a commit that referenced this pull request Jul 30, 2023
Update reference [HKL2021]: Appeared in 2022
kwankyu pushed a commit that referenced this pull request Sep 3, 2023
@kwankyu kwankyu deleted the fix/34794/run-doc-server-with-jupyter branch September 11, 2023 03:13
kwankyu pushed a commit that referenced this pull request Jul 22, 2024
Remove excessive blank lines around INPUT, OUTPUT, EXAMPLES, and before
docstring ending """. (#2)
kwankyu pushed a commit that referenced this pull request Sep 4, 2024
kwankyu pushed a commit that referenced this pull request Sep 4, 2024
* Add some `except`s

For C-return-type functions that raise exceptions (and their heirs).

* Use `except?` for `_rank`
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

1 participant