Update batch_dlkcat.json (#490)

labdao · Jul 14, 2023 · 1875a40 · 1875a40
1 parent b105e8a
commit 1875a40
Showing 1 changed file with 3 additions and 3 deletions.
diff --git a/tools/dlkcat/batch_dlkcat.json b/tools/dlkcat/batch_dlkcat.json
@@ -4,21 +4,21 @@
     "description": "batch predict enzyme catalytic activity from a protein sequence and molecule smile",
     "baseCommand": ["/bin/bash", "-c"],
     "arguments": [
-        "conda run -n env python prediction_for_input.py /inputs/input.tsv && mv output.tsv /outputs/"
+        "conda run -n env python prediction_for_input.py $(inputs.input_tsv.filepath) && mv output.tsv /outputs/"
     ],
     "dockerPull": "docker.io/mcmenemy/plex-dlkcat@sha256:92cfec2676bc5b8d75ee37c0fc31eb9c2e43c73a2acce2e4aaa60066b7a56f38",
     "gpuBool": false,
     "networkBool": false,
     "inputs": {
         "input_tsv": {
             "type": "File",
-            "glob": ["input.tsv"]
+            "glob": ["*.tsv"]
         }
     },
     "outputs": {
         "scores": {
             "type": "File",
-            "glob": ["output.tsv"]
+            "glob": ["*.tsv"]
         }
     }
 }