Release 0.76.15

See https://docs.lamin.ai/changelog

What's Changed

• 💚 Fix docs by @falexwolf in #2083
• 🔇 Fix Curator logging by @sunnyosun in #2085
• 🔊 Raise ValidationError by @sunnyosun in #2086
• ⬆️ Remove the pin on scipy by @Koncopd in #2087
• 🐛 Fix TypeError by @Zethson in #2089
• ✨ Restrict stdout of validation messages of Curator to max 10 terms by @Zethson in #2094
• ✨ Recursively query parents and children by @Koncopd in #2106
• 🐛 Proper numerous for Curator stdout by @Zethson in #2107
• ⬆️ Upgrade lamindb-setup by @Koncopd in #2114
• ✨ Stream pyarrow.dataset.dataset supported formats in Artifact.open() by @Koncopd in #2115
• ♻️ Refactor imports and update upath code by @Koncopd in #2116
• ✨ Python 3.12 support by @Zethson in #2092
• 📝 Add parquet example to arrays.ipynb by @Koncopd in #2118
• 🐛 Fix list validation in Curator by @sunnyosun in #2119
• ⬆️ Release sub modules by @sunnyosun in #2120

Full Changelog: 0.76.14...0.76.15

Release 0.76.14

See https://docs.lamin.ai/changelog/2024#db-0-76-14

What's Changed

• 🐛 Return include fields when one of them is empty by @sunnyosun in #2044
• 🧪 More tests of df include by @sunnyosun in #2045
• 📝 Consistent documentation for all schema modules by @falexwolf in #2047
• 🐛 Fix loading artifact by key and give clear errors if no artifacts or transforms found by @Koncopd in #2050
• 🎨 Remove update in add_ontology_from_df by @sunnyosun in #2051
• 🍱 Add omop, cellregistry, ourprojects by @falexwolf in #2049
• 📝 Update login docs for new API key by @Koncopd in #2054
• ✨ Upon Validator, populate ref_is_name fields in link tables by @sunnyosun in #2053
• 📝 Improve save_artifact docs by @sunnyosun in #2055
• ✏️ Only register new features in add_new_from_columns by @sunnyosun in #2057
• ✏️ Fix logging integer values by @sunnyosun in #2056
• 🔥 Remove .list_source() by @sunnyosun in #2058
• 🔈 Fix add new logging by @sunnyosun in #2059
• ♻️ Move cloud_to_local to lnamindb_setup.settings by @Koncopd in #2062
• 🐛 Fix tracking of notebooks on PyCharm by @Koncopd in #2064
• 📝 Document how to subclass Curator by @Zethson in #2022
• ✨ Error when renaming internal features and labels by @sunnyosun in #2061
• ✨ Add Collection.append() by @Koncopd in #2077
• ✨ Enable curating multiple categorical features per artifact against the same label registry by @falexwolf in #2080
• 🔥 Remove Curator.add_validated_from() by @sunnyosun in #2081
• 🎨 Fix Curator.from_mudata by @sunnyosun in #2082

Full Changelog: 0.76.13...0.76.14

Release 0.76.13

See https://docs.lamin.ai/changelog/2024#db-0-76-13

What's Changed

• 🐛 Do not double track runs by @falexwolf in #2032
• 🔥 Remove __getitem__ from QuerySet by @sunnyosun in #2034
• 🐛Fix track message by @Zethson in #2036
• ♻️ Properly resolve schema mismatch by @sunnyosun in #2040
• 🎨 for circular input/outputs by @sunnyosun in #2041
• 🐛 Fix get with using_key by @sunnyosun in #2042
• 💚 Fix switch instance test by @falexwolf in #2043

Full Changelog: 0.76.12...0.76.13

Release 0.76.12

See https://docs.lamin.ai/changelog/2024#db-0-76-12-bionty-0-51-2

What's Changed

• ♻️ Move lamindb_setup.settings.storage.cache_dir to lamindb_setup.settings.cache_dir by @Koncopd in #2013
• 🎨 Remove creates one artifact per file in the directory warning by @Zethson in #2015
• 📝 Use anon=True access for UPath.view_tree() in tutorial by @Koncopd in #2016
• ♻️ Some minor improvements by @falexwolf in #2018
• 🐛 Fix walrus and duplicated updated_at by @Koncopd in #2020
• ♻️ Migrate to edge function in connect() by @Koncopd in #2017
• 🏗️ Make lamindb-setup a dependency of lamin-cli by @falexwolf in #2021
• 🚸 Query with typed labels through .features by @falexwolf in #2023
• 📝 Document how to query by dictionary-like run parameters by @falexwolf in #2024
• ✨ Overhaul save_vitessce_config() to support multiple artifacts and non-.zarr by @keller-mark in #1953
• ✅ Add more tests for querying via .features by @falexwolf in #2028
• 🔊 More logging in save_vitessce_config() by @falexwolf in #2029

New Contributors

• @keller-mark made their first contribution in #1953

Full Changelog: 0.76.11...0.76.12

Release 0.76.11

See https://docs.lamin.ai/changelog/2024#db-0-76-11

What's Changed

• 📝 Fix docs by @falexwolf in #1999
• 🐛 Fix cache paths by @Koncopd in #2000
• 📝 Prettify track guide by @falexwolf in #2003
• 🐛 Fix label name display in .describe() by @falexwolf in #2006
• 💄 Strip NotebookNotSaved from report after ln.finish() by @Koncopd in #2007
• ✨ Add a reference manager schema module: findrefs by @falexwolf in #2009

Full Changelog: 0.76.10...0.76.11

Release 0.76.10

See https://docs.lamin.ai/changelog/2024#db-0-76-10

What's Changed

• 📝 Revise advice on managing notebook templates by @falexwolf in #1981
• 🚸 Minimal ln.track() by @falexwolf in #1982
• ⚡️ Speed up describe by @sunnyosun in #1973
• ✅ Add another test for running with tracked params, logging cosmetics by @falexwolf in #1984
• ✨ Track transfers as transforms by @falexwolf in #1985
• 🚸 lamin load → lamin connect & lamin get → lamin load by @Koncopd in #1983
• 🚚 Rename hub edge functions by @falexwolf in #1988
• 📝 Document how to work with run parameters by @falexwolf in #1989
• 🎨 Move .from_values() from Record to CanValidate by @falexwolf in #1993
• 🚸 Transfer: Warn about inconsistencies between source & target instances by @falexwolf in #1992
• 🚸 Improve lamin load UX for notebooks & scripts by @falexwolf in #1994
• ⚡️ Speed up from_values by @sunnyosun in #1970
• ⚡ Improve performance of ln.connect(), lamin connect, and lamin load for a notebook by @falexwolf in #1998

Full Changelog: 0.76.9...0.76.10

Release 0.76.9

See https://docs.lamin.ai/changelog/2024#db-0-76-9

What's Changed

• 📝 Add docs for cache and document environment variables by @Koncopd in #1964
• ♻️ Remove eliminated arguments from load by @Koncopd in #1969
• ✨ Enable notebook and script templates by @falexwolf in #1977
• 💚 Fix flaky cache test by @Koncopd in #1978
• ✨ Allow filtering obs indices in MappedCollection based on obs column by @Koncopd in #1974
• 🚸 Better dialogue upon clashing transform keys by @falexwolf in #1979

Full Changelog: 0.76.8...0.76.9

Release 0.76.8

See https://docs.lamin.ai/changelog#db-0-76-8

What's Changed

• 📝 Use unload in notebooks by @Koncopd in #1946
• 🐛 Fix unload by @Koncopd in #1947
• ✨ Store artifacts under their virtual keys in cache by @Koncopd in #1954
• 💚 Better cleanup in unit-core tests by @Koncopd in #1957
• 🚸 No traceback for invalid arguments by @falexwolf in #1956
• 🐛 Ensure is_latest is set to False in previous version if matching on artifact.key by @falexwolf in #1958
• 🐛 Fix .save writing to current folder for new versions of an Artifact by @Koncopd in #1959

Full Changelog: 0.76.7...0.76.8

Release 0.76.7

See https://docs.lamin.ai/changelog/2024#db-0-76-7-bionty-0-50-2

What's Changed

• 🎨 Fix issue templates labels by @Zethson in #1927
• ✨ Improve curation save terms msg by @Zethson in #1926
• ✨ Add UX issue template by @Zethson in #1928
• ✅ Test re-login in CLI by @Koncopd in #1929
• ✨ Add n_observations to tiledbsoma artifacts by @Koncopd in #1930
• 🎨 Speed up feature add_from by @sunnyosun in #1931
• 🔊 Warning instead of hint in _track_run_input by @Koncopd in #1933
• 🔊 More logging for import_from_source by @sunnyosun in #1934
• ✨ Enable displaying images, document artifact loaders by @falexwolf in #1938
• 🎨 Remove stream argument from artifact.load() by @Koncopd in #1941
• ✨ Allow to use Collection.mapped without saving by @Koncopd in #1942
• ⚡️ Cleanup on error in Artifact.load by @Koncopd in #1943
• 🚸 Do not throw an error but prompt upon ln.context.track() in a notebook by @falexwolf in #1925
• ✨ Enable getting the latest run environment for a transform by @falexwolf in #1944
• 🚸 Simplify CLI commands by @falexwolf in #1945

Full Changelog: 0.76.6...0.76.7

Release 0.76.6

See https://docs.lamin.ai/changelog/2024#db-0-76-6-bionty-0-50

What's Changed

• 🐛 Fix query for latest version in manual transform constructor by @falexwolf in #1900
• ✨ lamin get via key or uid by @falexwolf in #1901
• 📝 Move introduction to lamin-docs by @falexwolf in #1902
• 👷 Speed up tests by @falexwolf in #1903
• ♻️ Replace inheriting from HasFeatures & HasParams with composition by @falexwolf in #1904
• 🎨 Replace relation of Collection to FeatureSet with indirect relation through Artifact by @falexwolf in #1905
• 🔥 Remove deprecated artifact.backed() by @falexwolf in #1907
• 🚸 Better logging during transfer, describe, track() and raise an error if transferring outdated artifact by @falexwolf in #1908
• ⬆️ Upgrade *-artifact actions by @Koncopd in #1909
• 📝 Fix all registry docs by @falexwolf in #1910
• ⬆️ Update bionty by @sunnyosun in #1911
• 🐛 Fix collection.describe() by @falexwolf in #1912
• ✨ Enable negations in filter(), improve registries guide by @falexwolf in #1913
• 🐛 Reload transform upon passing same uid by @falexwolf in #1915
• 🐛 Fix parents update by @sunnyosun in #1917

Full Changelog: 0.76.5...0.76.6