To adapt recount-pump
to a new HPC system:
- Make a subdirectory
- Install miniconda and some python packages:
(install miniconda)
conda config --add channels conda-forge
conda install watchtower docopt pytest psutil sqlalchemy psycopg2 awscli
- Install
globus_sdk
python module, which is only available viapip
:
pip install globus_sdk
- You'll need your
~./aws/credentials
file populated for any AWS profiles you refer to in the configs - Thins you may need to add to your
bash
profile:- Adding
conda
to thePATH
module load singularity
- Set
SINGULARITY_CACHEDIR
- Adding
- In
projects/common/clusters/stampede2