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Added additional output showing search progress if SAGE_LOG=trace environment variable is set
Added additional warnings about precursor tolerances
Added configuration option precursor_charge to make it explicit what charge states are being searched in the case where the mzML does not contain charge state information, or where wide_window is turned on.
Changed
Added a warning message if variable modifications are specified as single values (e.g. 15.9949) instead of lists of values (e.g. [15.9949]). By v0.15 this will become a hard error and will not parse, to simplify some of the internal logic.