Fix for inheritance problem exposed in examples

core/src/main/java/org/lflang/ast/ASTUtils.java

@@ -63,6 +63,7 @@
 import org.lflang.TimeValue;
 import org.lflang.generator.CodeMap;
 import org.lflang.generator.InvalidSourceException;
+import org.lflang.generator.NamedInstance;
 import org.lflang.generator.ReactorInstance;
 import org.lflang.lf.Action;
 import org.lflang.lf.Assignment;
@@ -1662,6 +1663,15 @@ public static boolean isInCode(INode node) {
         && pri.getName().equals("Body");
   }
 
+  /**
+   * Return {@code true} if the given instance is top-level, i.e., its parent is {@code null}.
+   *
+   * @param instance The instance to check.
+   */
+  public static boolean isTopLevel(NamedInstance instance) {
+    return instance.getParent() == null;
+  }
+
   /** Return true if the given node starts on the same line as the given other node. */
   public static Predicate<INode> sameLine(ICompositeNode compNode) {
     return other -> {

core/src/main/java/org/lflang/federated/generator/FedASTUtils.java

@@ -441,7 +441,7 @@ private static Set<PortInstance> findUpstreamPortsInFederate(
       Set<ReactionInstance> reactionVisited) {
     Set<PortInstance> toReturn = new HashSet<>();
     if (port == null) return toReturn;
-    else if (federate.contains(port.getParent())) {
+    else if (ASTUtils.isTopLevel(port.getParent()) || federate.includes(port.getParent())) {
       // Reached the requested federate
       toReturn.add(port);
       visitedPorts.add(port);

core/src/main/java/org/lflang/federated/generator/FedImportEmitter.java

@@ -23,7 +23,7 @@ public class FedImportEmitter {
   String generateImports(FederateInstance federate, FedFileConfig fileConfig) {
     var imports =
         ((Model) federate.instantiation.eContainer().eContainer())
-            .getImports().stream().filter(federate::contains).toList();
+            .getImports().stream().filter(federate::references).toList();
 
     // Transform the URIs
     imports.stream()
@@ -46,7 +46,7 @@ String generateImports(FederateInstance federate, FedFileConfig fileConfig) {
                   var new_import = EcoreUtil.copy(i);
                   new_import
                       .getReactorClasses()
-                      .removeIf(importedReactor -> !federate.contains(importedReactor));
+                      .removeIf(importedReactor -> !federate.references(importedReactor));
                   return new_import;
                 })
             .map(FormattingUtil.renderer(federate.targetConfig.target))

core/src/main/java/org/lflang/federated/generator/FedMainEmitter.java

@@ -37,23 +37,21 @@ String generateMainReactor(
                 "\n",
                 renderer.apply(federate.instantiation),
                 ASTUtils.allStateVars(originalMainReactor).stream()
-                    .filter(federate::contains)
                     .map(renderer)
                     .collect(Collectors.joining("\n")),
                 ASTUtils.allActions(originalMainReactor).stream()
-                    .filter(federate::contains)
+                    .filter(federate::includes)
                     .map(renderer)
                     .collect(Collectors.joining("\n")),
                 ASTUtils.allTimers(originalMainReactor).stream()
-                    .filter(federate::contains)
+                    .filter(federate::includes)
                     .map(renderer)
                     .collect(Collectors.joining("\n")),
                 ASTUtils.allMethods(originalMainReactor).stream()
-                    .filter(federate::contains)
                     .map(renderer)
                     .collect(Collectors.joining("\n")),
                 ASTUtils.allReactions(originalMainReactor).stream()
-                    .filter(federate::contains)
+                    .filter(federate::includes)
                     .map(renderer)
                     .collect(Collectors.joining("\n")))
             .indent(4)
@@ -72,7 +70,7 @@ private CharSequence generateMainSignature(
       FederateInstance federate, Reactor originalMainReactor, Function<EObject, String> renderer) {
     var paramList =
         ASTUtils.allParameters(originalMainReactor).stream()
-            .filter(federate::contains)
+            .filter(federate::references)
             .map(renderer)
             .collect(Collectors.joining(",", "(", ")"));
     // Empty "()" is currently not allowed by the syntax

core/src/main/java/org/lflang/federated/generator/FedReactorEmitter.java

@@ -15,7 +15,7 @@ public FedReactorEmitter() {}
   String generateReactorDefinitions(FederateInstance federate) {
     return ((Model) federate.instantiation.eContainer().eContainer())
         .getReactors().stream()
-            .filter(federate::contains)
+            .filter(federate::references)
             .map(FormattingUtil.renderer(federate.targetConfig.target))
             .collect(Collectors.joining("\n"));
   }