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Merge pull request #343 from nh13/patch-7
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Update bwa.1 to remove ancient reference to picard
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lh3 authored Mar 6, 2022
2 parents 3ddd7b8 + 4bf3cdf commit 760098d
Showing 1 changed file with 2 additions and 2 deletions.
4 changes: 2 additions & 2 deletions bwa.1
Original file line number Diff line number Diff line change
Expand Up @@ -154,8 +154,8 @@ batch of reads.

The BWA-MEM algorithm performs local alignment. It may produce multiple primary
alignments for different part of a query sequence. This is a crucial feature
for long sequences. However, some tools such as Picard's markDuplicates does
not work with split alignments. One may consider to use option
for long sequences. However, some tools may not work with split alignments.
One may consider to use option
.B -M
to flag shorter split hits as secondary.

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