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Mention in man page that CIGAR strings in SA tags are approximate #1213

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May 22, 2024
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Mention in man page that CIGAR strings in SA tags are approximate #1213

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16d8261
Mention approx CIGAR strings in man page #724
fedarko May 18, 2024
fb59ab9
Fix FAQ typo
fedarko May 18, 2024
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2 changes: 1 addition & 1 deletion FAQ.md
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Expand Up @@ -2,7 +2,7 @@

Without `-a`, `-c` or `--cs`, minimap2 only finds *approximate* mapping
locations without detailed base alignment. In particular, the start and end
positions of the alignment are impricise. With one of those options, minimap2
positions of the alignment are imprecise. With one of those options, minimap2
will perform base alignment, which is generally more accurate but is much
slower.

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2 changes: 1 addition & 1 deletion minimap2.1
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Expand Up @@ -742,7 +742,7 @@ s2 i Chaining score of the best secondary chain
NM i Total number of mismatches and gaps in the alignment
MD Z To generate the ref sequence in the alignment
AS i DP alignment score
SA Z List of other supplementary alignments
SA Z List of other supplementary alignments (with approximate CIGAR strings)
ms i DP score of the max scoring segment in the alignment
nn i Number of ambiguous bases in the alignment
ts A Transcript strand (splice mode only)
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