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@li-lab-genetics

Li Lab (Statistical Genetics and Bioinformatics)

Software created and maintained by members of the Li Lab
README.md

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  1. staarpipeline-rap staarpipeline-rap Public

    An app for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline in UK Biobank RAP

    R 4 2

  2. favorannotator-rap favorannotator-rap Public

    An app for automatically functionally annotating the variants of whole-genome/whole-exome sequencing (WGS/WES) studies and integrating the functional annotations with the genotype data using FAVORa…

    R 3

  3. staarpipelinesummary_varset-rap staarpipelinesummary_varset-rap Public

    An app for summarizing association analysis results of whole-genome/whole-exome sequencing (WGS/WES) studies in UK Biobank RAP

    R 2 1

  4. staarpipelinesummary_indvar-rap staarpipelinesummary_indvar-rap Public

    An app for summarizing association analysis results of whole-genome/whole-exome sequencing (WGS/WES) studies in UK Biobank RAP

    R 2 1

  5. MetaSTAARlite-Tutorial MetaSTAARlite-Tutorial Public

    The tutorial for performing association meta-analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using FAVORannotator, MetaSTAARlite and MetaSTAARliteSummary

    R 1 1

  6. MetaSTAARlite MetaSTAARlite Public

    A lightweight R package for performing association meta-analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using MetaSTAAR pipeline

    R 1 1

Repositories

Showing 8 of 8 repositories
  • staarpipeline-rap-batch Public
    li-lab-genetics/staarpipeline-rap-batch’s past year of commit activity
    R 1 MIT 0 0 0 Updated Nov 21, 2024
  • staarpipeline-rap Public

    An app for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline in UK Biobank RAP

    li-lab-genetics/staarpipeline-rap’s past year of commit activity
    R 4 MIT 2 0 0 Updated Nov 19, 2024
  • MetaSTAARlite Public

    A lightweight R package for performing association meta-analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using MetaSTAAR pipeline

    li-lab-genetics/MetaSTAARlite’s past year of commit activity
    R 1 GPL-3.0 1 0 0 Updated Nov 7, 2024
  • MetaSTAARlite-Tutorial Public

    The tutorial for performing association meta-analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using FAVORannotator, MetaSTAARlite and MetaSTAARliteSummary

    li-lab-genetics/MetaSTAARlite-Tutorial’s past year of commit activity
    R 1 1 0 0 Updated Oct 19, 2024
  • favorannotator-rap Public

    An app for automatically functionally annotating the variants of whole-genome/whole-exome sequencing (WGS/WES) studies and integrating the functional annotations with the genotype data using FAVORannotator in UK Biobank RAP

    li-lab-genetics/favorannotator-rap’s past year of commit activity
    R 3 MIT 0 0 0 Updated Feb 16, 2024
  • staarpipelinesummary_indvar-rap Public

    An app for summarizing association analysis results of whole-genome/whole-exome sequencing (WGS/WES) studies in UK Biobank RAP

    li-lab-genetics/staarpipelinesummary_indvar-rap’s past year of commit activity
    R 2 MIT 1 0 0 Updated Oct 3, 2023
  • staarpipelinesummary_varset-rap Public

    An app for summarizing association analysis results of whole-genome/whole-exome sequencing (WGS/WES) studies in UK Biobank RAP

    li-lab-genetics/staarpipelinesummary_varset-rap’s past year of commit activity
    R 2 MIT 1 0 0 Updated Oct 3, 2023
  • .github Public
    li-lab-genetics/.github’s past year of commit activity
    0 0 0 0 Updated Sep 14, 2023

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