Merge pull request #266 from thomas-rocke/DislFixes #271
45 tests run, 0 passed, 0 skipped, 45 failed.
Annotations
Check failure on line 25 in tests/manybody/test_manybody_molecules.py
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test_manybody_molecules.manybody.test_manybody_molecules
collection failure
Raw output
ImportError while importing test module '/home/runner/work/matscipy/matscipy/tests/manybody/test_manybody_molecules.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
/usr/lib/python3.10/importlib/__init__.py:126: in import_module
return _bootstrap._gcd_import(name[level:], package, level)
manybody/test_manybody_molecules.py:25: in <module>
from ase.optimize import FIRE
/usr/local/lib/python3.10/dist-packages/ase/optimize/__init__.py:8: in <module>
from ase.optimize.gpmin.gpmin import GPMin
/usr/local/lib/python3.10/dist-packages/ase/optimize/gpmin/gpmin.py:4: in <module>
from scipy.optimize import minimize
/usr/lib/python3/dist-packages/scipy/optimize/__init__.py:399: in <module>
from ._optimize import *
/usr/lib/python3/dist-packages/scipy/optimize/_optimize.py:30: in <module>
from numpy import (atleast_1d, eye, argmin, zeros, shape, squeeze,
E ImportError: cannot import name 'Inf' from 'numpy' (/usr/local/lib/python3.10/dist-packages/numpy/__init__.py)
Check failure on line 9 in tests/manybody/test_manybody_potentials.py
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test_manybody_potentials.manybody.test_manybody_potentials
collection failure
Raw output
ImportError while importing test module '/home/runner/work/matscipy/matscipy/tests/manybody/test_manybody_potentials.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
/usr/lib/python3.10/importlib/__init__.py:126: in import_module
return _bootstrap._gcd_import(name[level:], package, level)
manybody/test_manybody_potentials.py:9: in <module>
from manybody_fixtures import (
manybody/manybody_fixtures.py:4: in <module>
import matscipy.calculators.manybody.potentials as potentials
/usr/local/lib/python3.10/dist-packages/matscipy/calculators/__init__.py:27: in <module>
from .eam import EAM
/usr/local/lib/python3.10/dist-packages/matscipy/calculators/eam/__init__.py:25: in <module>
from .calculator import EAM
/usr/local/lib/python3.10/dist-packages/matscipy/calculators/eam/calculator.py:27: in <module>
from matscipy.calculators.calculator import MatscipyCalculator
/usr/local/lib/python3.10/dist-packages/matscipy/calculators/calculator.py:26: in <module>
from scipy.sparse.linalg import cg
/usr/lib/python3/dist-packages/scipy/sparse/__init__.py:267: in <module>
from ._csr import *
/usr/lib/python3/dist-packages/scipy/sparse/_csr.py:10: in <module>
from ._sparsetools import (csr_tocsc, csr_tobsr, csr_count_blocks,
E ImportError: numpy.core.multiarray failed to import
Check failure on line 29 in tests/manybody/test_newmb.py
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test_newmb.manybody.test_newmb
collection failure
Raw output
ImportError while importing test module '/home/runner/work/matscipy/matscipy/tests/manybody/test_newmb.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
/usr/lib/python3.10/importlib/__init__.py:126: in import_module
return _bootstrap._gcd_import(name[level:], package, level)
manybody/test_newmb.py:29: in <module>
from matscipy.numerical import (
/usr/local/lib/python3.10/dist-packages/matscipy/numerical.py:30: in <module>
from scipy.sparse import coo_matrix
/usr/lib/python3/dist-packages/scipy/sparse/__init__.py:267: in <module>
from ._csr import *
/usr/lib/python3/dist-packages/scipy/sparse/_csr.py:10: in <module>
from ._sparsetools import (csr_tocsc, csr_tobsr, csr_count_blocks,
E ImportError: numpy.core.multiarray failed to import
Check failure on line 1 in tests/test_angle_distribution.py
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test_angle_distribution
collection failure
Raw output
test_angle_distribution.py:48: in <module>
import ase.io as io
/usr/local/lib/python3.10/dist-packages/ase/io/__init__.py:4: in <module>
from ase.io.trajectory import PickleTrajectory, Trajectory
/usr/local/lib/python3.10/dist-packages/ase/io/trajectory.py:15: in <module>
from ase.io.pickletrajectory import PickleTrajectory
/usr/local/lib/python3.10/dist-packages/ase/io/pickletrajectory.py:13: in <module>
from ase.constraints import FixAtoms
/usr/local/lib/python3.10/dist-packages/ase/constraints.py:16: in <module>
from ase.spacegroup.symmetrize import (prep_symmetry, refine_symmetry,
/usr/local/lib/python3.10/dist-packages/ase/spacegroup/__init__.py:4: in <module>
from ase.spacegroup.xtal import crystal
/usr/local/lib/python3.10/dist-packages/ase/spacegroup/xtal.py:13: in <module>
from scipy import spatial
/usr/lib/python3/dist-packages/scipy/spatial/__init__.py:102: in <module>
from ._kdtree import *
/usr/lib/python3/dist-packages/scipy/spatial/_kdtree.py:5: in <module>
from ._ckdtree import cKDTree, cKDTreeNode
_ckdtree.pyx:1: in init scipy.spatial._ckdtree
???
E ValueError: numpy.dtype size changed, may indicate binary incompatibility. Expected 96 from C header, got 88 from PyObject
Check failure on line 1 in tests/test_atomic_strain.py
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test_atomic_strain
collection failure
Raw output
test_atomic_strain.py:47: in <module>
import ase.io as io
/usr/local/lib/python3.10/dist-packages/ase/io/__init__.py:4: in <module>
from ase.io.trajectory import PickleTrajectory, Trajectory
/usr/local/lib/python3.10/dist-packages/ase/io/trajectory.py:15: in <module>
from ase.io.pickletrajectory import PickleTrajectory
/usr/local/lib/python3.10/dist-packages/ase/io/pickletrajectory.py:13: in <module>
from ase.constraints import FixAtoms
/usr/local/lib/python3.10/dist-packages/ase/constraints.py:16: in <module>
from ase.spacegroup.symmetrize import (prep_symmetry, refine_symmetry,
/usr/local/lib/python3.10/dist-packages/ase/spacegroup/__init__.py:4: in <module>
from ase.spacegroup.xtal import crystal
/usr/local/lib/python3.10/dist-packages/ase/spacegroup/xtal.py:13: in <module>
from scipy import spatial
/usr/lib/python3/dist-packages/scipy/spatial/__init__.py:102: in <module>
from ._kdtree import *
/usr/lib/python3/dist-packages/scipy/spatial/_kdtree.py:5: in <module>
from ._ckdtree import cKDTree, cKDTreeNode
_ckdtree.pyx:1: in init scipy.spatial._ckdtree
???
E ValueError: numpy.dtype size changed, may indicate binary incompatibility. Expected 96 from C header, got 88 from PyObject
Check failure on line 1 in tests/test_bop.py
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test_bop
collection failure
Raw output
test_bop.py:30: in <module>
import ase.constraints
/usr/local/lib/python3.10/dist-packages/ase/constraints.py:16: in <module>
from ase.spacegroup.symmetrize import (prep_symmetry, refine_symmetry,
/usr/local/lib/python3.10/dist-packages/ase/spacegroup/__init__.py:4: in <module>
from ase.spacegroup.xtal import crystal
/usr/local/lib/python3.10/dist-packages/ase/spacegroup/xtal.py:13: in <module>
from scipy import spatial
/usr/lib/python3/dist-packages/scipy/spatial/__init__.py:102: in <module>
from ._kdtree import *
/usr/lib/python3/dist-packages/scipy/spatial/_kdtree.py:5: in <module>
from ._ckdtree import cKDTree, cKDTreeNode
_ckdtree.pyx:1: in init scipy.spatial._ckdtree
???
E ValueError: numpy.dtype size changed, may indicate binary incompatibility. Expected 96 from C header, got 88 from PyObject
Check failure on line 3 in tests/test_build_3D_crack.py
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test_build_3D_crack
collection failure
Raw output
ImportError while importing test module '/home/runner/work/matscipy/matscipy/tests/test_build_3D_crack.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
/usr/lib/python3.10/importlib/__init__.py:126: in import_module
return _bootstrap._gcd_import(name[level:], package, level)
test_build_3D_crack.py:3: in <module>
from ase.build import bulk
/usr/local/lib/python3.10/dist-packages/ase/build/__init__.py:17: in <module>
from ase.build.connected import (connected_atoms, connected_indices,
/usr/local/lib/python3.10/dist-packages/ase/build/connected.py:3: in <module>
from ase.neighborlist import NeighborList
/usr/local/lib/python3.10/dist-packages/ase/neighborlist.py:4: in <module>
import scipy.sparse.csgraph as csgraph
/usr/lib/python3/dist-packages/scipy/sparse/__init__.py:267: in <module>
from ._csr import *
/usr/lib/python3/dist-packages/scipy/sparse/_csr.py:10: in <module>
from ._sparsetools import (csr_tocsc, csr_tobsr, csr_count_blocks,
E ImportError: numpy.core.multiarray failed to import
Check failure on line 1 in tests/test_bulk_properties.py
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test_bulk_properties
collection failure
Raw output
test_bulk_properties.py:26: in <module>
import ase.constraints
/usr/local/lib/python3.10/dist-packages/ase/constraints.py:16: in <module>
from ase.spacegroup.symmetrize import (prep_symmetry, refine_symmetry,
/usr/local/lib/python3.10/dist-packages/ase/spacegroup/__init__.py:4: in <module>
from ase.spacegroup.xtal import crystal
/usr/local/lib/python3.10/dist-packages/ase/spacegroup/xtal.py:13: in <module>
from scipy import spatial
/usr/lib/python3/dist-packages/scipy/spatial/__init__.py:102: in <module>
from ._kdtree import *
/usr/lib/python3/dist-packages/scipy/spatial/_kdtree.py:5: in <module>
from ._ckdtree import cKDTree, cKDTreeNode
_ckdtree.pyx:1: in init scipy.spatial._ckdtree
???
E ValueError: numpy.dtype size changed, may indicate binary incompatibility. Expected 96 from C header, got 88 from PyObject
Check failure on line 3 in tests/test_cauchy_born_corrector.py
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test_cauchy_born_corrector
collection failure
Raw output
ImportError while importing test module '/home/runner/work/matscipy/matscipy/tests/test_cauchy_born_corrector.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
/usr/lib/python3.10/importlib/__init__.py:126: in import_module
return _bootstrap._gcd_import(name[level:], package, level)
test_cauchy_born_corrector.py:3: in <module>
from ase.build import bulk
/usr/local/lib/python3.10/dist-packages/ase/build/__init__.py:17: in <module>
from ase.build.connected import (connected_atoms, connected_indices,
/usr/local/lib/python3.10/dist-packages/ase/build/connected.py:3: in <module>
from ase.neighborlist import NeighborList
/usr/local/lib/python3.10/dist-packages/ase/neighborlist.py:4: in <module>
import scipy.sparse.csgraph as csgraph
/usr/lib/python3/dist-packages/scipy/sparse/__init__.py:267: in <module>
from ._csr import *
/usr/lib/python3/dist-packages/scipy/sparse/_csr.py:10: in <module>
from ._sparsetools import (csr_tocsc, csr_tobsr, csr_count_blocks,
E ImportError: numpy.core.multiarray failed to import
Check failure on line 5 in tests/test_cluster_stable_sort.py
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test_cluster_stable_sort
collection failure
Raw output
ImportError while importing test module '/home/runner/work/matscipy/matscipy/tests/test_cluster_stable_sort.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
/usr/lib/python3.10/importlib/__init__.py:126: in import_module
return _bootstrap._gcd_import(name[level:], package, level)
test_cluster_stable_sort.py:5: in <module>
from ase.build import bulk
/usr/local/lib/python3.10/dist-packages/ase/build/__init__.py:17: in <module>
from ase.build.connected import (connected_atoms, connected_indices,
/usr/local/lib/python3.10/dist-packages/ase/build/connected.py:3: in <module>
from ase.neighborlist import NeighborList
/usr/local/lib/python3.10/dist-packages/ase/neighborlist.py:4: in <module>
import scipy.sparse.csgraph as csgraph
/usr/lib/python3/dist-packages/scipy/sparse/__init__.py:267: in <module>
from ._csr import *
/usr/lib/python3/dist-packages/scipy/sparse/_csr.py:10: in <module>
from ._sparsetools import (csr_tocsc, csr_tobsr, csr_count_blocks,
E ImportError: numpy.core.multiarray failed to import
Check failure on line 1 in tests/test_committee.py
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test_committee
collection failure
Raw output
test_committee.py:8: in <module>
import ase.io
/usr/local/lib/python3.10/dist-packages/ase/io/__init__.py:4: in <module>
from ase.io.trajectory import PickleTrajectory, Trajectory
/usr/local/lib/python3.10/dist-packages/ase/io/trajectory.py:15: in <module>
from ase.io.pickletrajectory import PickleTrajectory
/usr/local/lib/python3.10/dist-packages/ase/io/pickletrajectory.py:13: in <module>
from ase.constraints import FixAtoms
/usr/local/lib/python3.10/dist-packages/ase/constraints.py:16: in <module>
from ase.spacegroup.symmetrize import (prep_symmetry, refine_symmetry,
/usr/local/lib/python3.10/dist-packages/ase/spacegroup/__init__.py:4: in <module>
from ase.spacegroup.xtal import crystal
/usr/local/lib/python3.10/dist-packages/ase/spacegroup/xtal.py:13: in <module>
from scipy import spatial
/usr/lib/python3/dist-packages/scipy/spatial/__init__.py:102: in <module>
from ._kdtree import *
/usr/lib/python3/dist-packages/scipy/spatial/_kdtree.py:5: in <module>
from ._ckdtree import cKDTree, cKDTreeNode
_ckdtree.pyx:1: in init scipy.spatial._ckdtree
???
E ValueError: numpy.dtype size changed, may indicate binary incompatibility. Expected 96 from C header, got 88 from PyObject
Check failure on line 1 in tests/test_crack.py
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test_crack
collection failure
Raw output
test_crack.py:25: in <module>
import ase.io
/usr/local/lib/python3.10/dist-packages/ase/io/__init__.py:4: in <module>
from ase.io.trajectory import PickleTrajectory, Trajectory
/usr/local/lib/python3.10/dist-packages/ase/io/trajectory.py:15: in <module>
from ase.io.pickletrajectory import PickleTrajectory
/usr/local/lib/python3.10/dist-packages/ase/io/pickletrajectory.py:13: in <module>
from ase.constraints import FixAtoms
/usr/local/lib/python3.10/dist-packages/ase/constraints.py:16: in <module>
from ase.spacegroup.symmetrize import (prep_symmetry, refine_symmetry,
/usr/local/lib/python3.10/dist-packages/ase/spacegroup/__init__.py:4: in <module>
from ase.spacegroup.xtal import crystal
/usr/local/lib/python3.10/dist-packages/ase/spacegroup/xtal.py:13: in <module>
from scipy import spatial
/usr/lib/python3/dist-packages/scipy/spatial/__init__.py:102: in <module>
from ._kdtree import *
/usr/lib/python3/dist-packages/scipy/spatial/_kdtree.py:5: in <module>
from ._ckdtree import cKDTree, cKDTreeNode
_ckdtree.pyx:1: in init scipy.spatial._ckdtree
???
E ValueError: numpy.dtype size changed, may indicate binary incompatibility. Expected 96 from C header, got 88 from PyObject
Check failure on line 1 in tests/test_cubic_crystal_crack.py
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test_cubic_crystal_crack
collection failure
Raw output
test_cubic_crystal_crack.py:49: in <module>
from scipy.integrate import quadrature
/usr/lib/python3/dist-packages/scipy/integrate/__init__.py:92: in <module>
from ._quadrature import *
/usr/lib/python3/dist-packages/scipy/integrate/_quadrature.py:12: in <module>
from scipy.special import roots_legendre
/usr/lib/python3/dist-packages/scipy/special/__init__.py:649: in <module>
from . import _ufuncs
_ufuncs.pyx:1: in init scipy.special._ufuncs
???
E ValueError: numpy.dtype size changed, may indicate binary incompatibility. Expected 96 from C header, got 88 from PyObject
Check failure on line 24 in tests/test_dislocation.py
github-actions / JUnit Test Report
test_dislocation
collection failure
Raw output
ImportError while importing test module '/home/runner/work/matscipy/matscipy/tests/test_dislocation.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
/usr/lib/python3.10/importlib/__init__.py:126: in import_module
return _bootstrap._gcd_import(name[level:], package, level)
test_dislocation.py:24: in <module>
from matscipy.neighbours import coordination
/usr/local/lib/python3.10/dist-packages/matscipy/neighbours.py:38: in <module>
from . import ffi
/usr/local/lib/python3.10/dist-packages/matscipy/ffi.py:36: in <module>
from ._matscipy import * # noqa
E ImportError: numpy.core.multiarray failed to import
Check failure on line 50 in tests/test_eam_average_atom.py
github-actions / JUnit Test Report
test_eam_average_atom
collection failure
Raw output
ImportError while importing test module '/home/runner/work/matscipy/matscipy/tests/test_eam_average_atom.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
/usr/lib/python3.10/importlib/__init__.py:126: in import_module
return _bootstrap._gcd_import(name[level:], package, level)
test_eam_average_atom.py:50: in <module>
from matscipy.calculators.eam import io, average_atom
/usr/local/lib/python3.10/dist-packages/matscipy/calculators/__init__.py:27: in <module>
from .eam import EAM
/usr/local/lib/python3.10/dist-packages/matscipy/calculators/eam/__init__.py:25: in <module>
from .calculator import EAM
/usr/local/lib/python3.10/dist-packages/matscipy/calculators/eam/calculator.py:27: in <module>
from matscipy.calculators.calculator import MatscipyCalculator
/usr/local/lib/python3.10/dist-packages/matscipy/calculators/calculator.py:26: in <module>
from scipy.sparse.linalg import cg
/usr/lib/python3/dist-packages/scipy/sparse/__init__.py:267: in <module>
from ._csr import *
/usr/lib/python3/dist-packages/scipy/sparse/_csr.py:10: in <module>
from ._sparsetools import (csr_tocsc, csr_tobsr, csr_count_blocks,
E ImportError: numpy.core.multiarray failed to import
Check failure on line 1 in tests/test_eam_calculator.py
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test_eam_calculator
collection failure
Raw output
test_eam_calculator.py:33: in <module>
import ase.io as io
/usr/local/lib/python3.10/dist-packages/ase/io/__init__.py:4: in <module>
from ase.io.trajectory import PickleTrajectory, Trajectory
/usr/local/lib/python3.10/dist-packages/ase/io/trajectory.py:15: in <module>
from ase.io.pickletrajectory import PickleTrajectory
/usr/local/lib/python3.10/dist-packages/ase/io/pickletrajectory.py:13: in <module>
from ase.constraints import FixAtoms
/usr/local/lib/python3.10/dist-packages/ase/constraints.py:16: in <module>
from ase.spacegroup.symmetrize import (prep_symmetry, refine_symmetry,
/usr/local/lib/python3.10/dist-packages/ase/spacegroup/__init__.py:4: in <module>
from ase.spacegroup.xtal import crystal
/usr/local/lib/python3.10/dist-packages/ase/spacegroup/xtal.py:13: in <module>
from scipy import spatial
/usr/lib/python3/dist-packages/scipy/spatial/__init__.py:102: in <module>
from ._kdtree import *
/usr/lib/python3/dist-packages/scipy/spatial/_kdtree.py:5: in <module>
from ._ckdtree import cKDTree, cKDTreeNode
_ckdtree.pyx:1: in init scipy.spatial._ckdtree
???
E ValueError: numpy.dtype size changed, may indicate binary incompatibility. Expected 96 from C header, got 88 from PyObject
Check failure on line 1 in tests/test_eam_calculator_forces_and_hessian.py
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test_eam_calculator_forces_and_hessian
collection failure
Raw output
test_eam_calculator_forces_and_hessian.py:50: in <module>
import ase.io as io
/usr/local/lib/python3.10/dist-packages/ase/io/__init__.py:4: in <module>
from ase.io.trajectory import PickleTrajectory, Trajectory
/usr/local/lib/python3.10/dist-packages/ase/io/trajectory.py:15: in <module>
from ase.io.pickletrajectory import PickleTrajectory
/usr/local/lib/python3.10/dist-packages/ase/io/pickletrajectory.py:13: in <module>
from ase.constraints import FixAtoms
/usr/local/lib/python3.10/dist-packages/ase/constraints.py:16: in <module>
from ase.spacegroup.symmetrize import (prep_symmetry, refine_symmetry,
/usr/local/lib/python3.10/dist-packages/ase/spacegroup/__init__.py:4: in <module>
from ase.spacegroup.xtal import crystal
/usr/local/lib/python3.10/dist-packages/ase/spacegroup/xtal.py:13: in <module>
from scipy import spatial
/usr/lib/python3/dist-packages/scipy/spatial/__init__.py:102: in <module>
from ._kdtree import *
/usr/lib/python3/dist-packages/scipy/spatial/_kdtree.py:5: in <module>
from ._ckdtree import cKDTree, cKDTreeNode
_ckdtree.pyx:1: in init scipy.spatial._ckdtree
???
E ValueError: numpy.dtype size changed, may indicate binary incompatibility. Expected 96 from C header, got 88 from PyObject
Check failure on line 50 in tests/test_eam_io.py
github-actions / JUnit Test Report
test_eam_io
collection failure
Raw output
ImportError while importing test module '/home/runner/work/matscipy/matscipy/tests/test_eam_io.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
/usr/lib/python3.10/importlib/__init__.py:126: in import_module
return _bootstrap._gcd_import(name[level:], package, level)
test_eam_io.py:50: in <module>
from matscipy.calculators.eam.io import (read_eam,
/usr/local/lib/python3.10/dist-packages/matscipy/calculators/__init__.py:27: in <module>
from .eam import EAM
/usr/local/lib/python3.10/dist-packages/matscipy/calculators/eam/__init__.py:25: in <module>
from .calculator import EAM
/usr/local/lib/python3.10/dist-packages/matscipy/calculators/eam/calculator.py:27: in <module>
from matscipy.calculators.calculator import MatscipyCalculator
/usr/local/lib/python3.10/dist-packages/matscipy/calculators/calculator.py:26: in <module>
from scipy.sparse.linalg import cg
/usr/lib/python3/dist-packages/scipy/sparse/__init__.py:267: in <module>
from ._csr import *
/usr/lib/python3/dist-packages/scipy/sparse/_csr.py:10: in <module>
from ._sparsetools import (csr_tocsc, csr_tobsr, csr_count_blocks,
E ImportError: numpy.core.multiarray failed to import
Check failure on line 1 in tests/test_elastic_moduli.py
github-actions / JUnit Test Report
test_elastic_moduli
collection failure
Raw output
test_elastic_moduli.py:47: in <module>
from matscipy.elasticity import elastic_moduli
/usr/local/lib/python3.10/dist-packages/matscipy/elasticity.py:33: in <module>
import scipy.stats as scipy_stats
/usr/lib/python3/dist-packages/scipy/stats/__init__.py:453: in <module>
from ._stats_py import *
/usr/lib/python3/dist-packages/scipy/stats/_stats_py.py:38: in <module>
from scipy.spatial.distance import cdist
/usr/lib/python3/dist-packages/scipy/spatial/__init__.py:102: in <module>
from ._kdtree import *
/usr/lib/python3/dist-packages/scipy/spatial/_kdtree.py:5: in <module>
from ._ckdtree import cKDTree, cKDTreeNode
_ckdtree.pyx:1: in init scipy.spatial._ckdtree
???
E ValueError: numpy.dtype size changed, may indicate binary incompatibility. Expected 96 from C header, got 88 from PyObject
Check failure on line 1 in tests/test_electrochemistry_cli.py
github-actions / JUnit Test Report
test_electrochemistry_cli
collection failure
Raw output
test_electrochemistry_cli.py:21: in <module>
import ase.io
/usr/local/lib/python3.10/dist-packages/ase/io/__init__.py:4: in <module>
from ase.io.trajectory import PickleTrajectory, Trajectory
/usr/local/lib/python3.10/dist-packages/ase/io/trajectory.py:15: in <module>
from ase.io.pickletrajectory import PickleTrajectory
/usr/local/lib/python3.10/dist-packages/ase/io/pickletrajectory.py:13: in <module>
from ase.constraints import FixAtoms
/usr/local/lib/python3.10/dist-packages/ase/constraints.py:16: in <module>
from ase.spacegroup.symmetrize import (prep_symmetry, refine_symmetry,
/usr/local/lib/python3.10/dist-packages/ase/spacegroup/__init__.py:4: in <module>
from ase.spacegroup.xtal import crystal
/usr/local/lib/python3.10/dist-packages/ase/spacegroup/xtal.py:13: in <module>
from scipy import spatial
/usr/lib/python3/dist-packages/scipy/spatial/__init__.py:102: in <module>
from ._kdtree import *
/usr/lib/python3/dist-packages/scipy/spatial/_kdtree.py:5: in <module>
from ._ckdtree import cKDTree, cKDTreeNode
_ckdtree.pyx:1: in init scipy.spatial._ckdtree
???
E ValueError: numpy.dtype size changed, may indicate binary incompatibility. Expected 96 from C header, got 88 from PyObject
Check failure on line 1 in tests/test_energy_release.py
github-actions / JUnit Test Report
test_energy_release
collection failure
Raw output
test_energy_release.py:47: in <module>
import ase.io
/usr/local/lib/python3.10/dist-packages/ase/io/__init__.py:4: in <module>
from ase.io.trajectory import PickleTrajectory, Trajectory
/usr/local/lib/python3.10/dist-packages/ase/io/trajectory.py:15: in <module>
from ase.io.pickletrajectory import PickleTrajectory
/usr/local/lib/python3.10/dist-packages/ase/io/pickletrajectory.py:13: in <module>
from ase.constraints import FixAtoms
/usr/local/lib/python3.10/dist-packages/ase/constraints.py:16: in <module>
from ase.spacegroup.symmetrize import (prep_symmetry, refine_symmetry,
/usr/local/lib/python3.10/dist-packages/ase/spacegroup/__init__.py:4: in <module>
from ase.spacegroup.xtal import crystal
/usr/local/lib/python3.10/dist-packages/ase/spacegroup/xtal.py:13: in <module>
from scipy import spatial
/usr/lib/python3/dist-packages/scipy/spatial/__init__.py:102: in <module>
from ._kdtree import *
/usr/lib/python3/dist-packages/scipy/spatial/_kdtree.py:5: in <module>
from ._ckdtree import cKDTree, cKDTreeNode
_ckdtree.pyx:1: in init scipy.spatial._ckdtree
???
E ValueError: numpy.dtype size changed, may indicate binary incompatibility. Expected 96 from C header, got 88 from PyObject
Check failure on line 46 in tests/test_ewald.py
github-actions / JUnit Test Report
test_ewald
collection failure
Raw output
ImportError while importing test module '/home/runner/work/matscipy/matscipy/tests/test_ewald.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
/usr/lib/python3.10/importlib/__init__.py:126: in import_module
return _bootstrap._gcd_import(name[level:], package, level)
test_ewald.py:46: in <module>
from ase.optimize import FIRE
/usr/local/lib/python3.10/dist-packages/ase/optimize/__init__.py:8: in <module>
from ase.optimize.gpmin.gpmin import GPMin
/usr/local/lib/python3.10/dist-packages/ase/optimize/gpmin/gpmin.py:4: in <module>
from scipy.optimize import minimize
/usr/lib/python3/dist-packages/scipy/optimize/__init__.py:399: in <module>
from ._optimize import *
/usr/lib/python3/dist-packages/scipy/optimize/_optimize.py:30: in <module>
from numpy import (atleast_1d, eye, argmin, zeros, shape, squeeze,
E ImportError: cannot import name 'Inf' from 'numpy' (/usr/local/lib/python3.10/dist-packages/numpy/__init__.py)
Check failure on line 1 in tests/test_fit_elastic_constants.py
github-actions / JUnit Test Report
test_fit_elastic_constants
collection failure
Raw output
test_fit_elastic_constants.py:47: in <module>
import ase.io
/usr/local/lib/python3.10/dist-packages/ase/io/__init__.py:4: in <module>
from ase.io.trajectory import PickleTrajectory, Trajectory
/usr/local/lib/python3.10/dist-packages/ase/io/trajectory.py:15: in <module>
from ase.io.pickletrajectory import PickleTrajectory
/usr/local/lib/python3.10/dist-packages/ase/io/pickletrajectory.py:13: in <module>
from ase.constraints import FixAtoms
/usr/local/lib/python3.10/dist-packages/ase/constraints.py:16: in <module>
from ase.spacegroup.symmetrize import (prep_symmetry, refine_symmetry,
/usr/local/lib/python3.10/dist-packages/ase/spacegroup/__init__.py:4: in <module>
from ase.spacegroup.xtal import crystal
/usr/local/lib/python3.10/dist-packages/ase/spacegroup/xtal.py:13: in <module>
from scipy import spatial
/usr/lib/python3/dist-packages/scipy/spatial/__init__.py:102: in <module>
from ._kdtree import *
/usr/lib/python3/dist-packages/scipy/spatial/_kdtree.py:5: in <module>
from ._ckdtree import cKDTree, cKDTreeNode
_ckdtree.pyx:1: in init scipy.spatial._ckdtree
???
E ValueError: numpy.dtype size changed, may indicate binary incompatibility. Expected 96 from C header, got 88 from PyObject
Check failure on line 1 in tests/test_full_to_Voigt.py
github-actions / JUnit Test Report
test_full_to_Voigt
collection failure
Raw output
test_full_to_Voigt.py:47: in <module>
from matscipy.elasticity import (full_3x3_to_Voigt_6_index,
/usr/local/lib/python3.10/dist-packages/matscipy/elasticity.py:33: in <module>
import scipy.stats as scipy_stats
/usr/lib/python3/dist-packages/scipy/stats/__init__.py:453: in <module>
from ._stats_py import *
/usr/lib/python3/dist-packages/scipy/stats/_stats_py.py:38: in <module>
from scipy.spatial.distance import cdist
/usr/lib/python3/dist-packages/scipy/spatial/__init__.py:102: in <module>
from ._kdtree import *
/usr/lib/python3/dist-packages/scipy/spatial/_kdtree.py:5: in <module>
from ._ckdtree import cKDTree, cKDTreeNode
_ckdtree.pyx:1: in init scipy.spatial._ckdtree
???
E ValueError: numpy.dtype size changed, may indicate binary incompatibility. Expected 96 from C header, got 88 from PyObject
Check failure on line 5 in tests/test_gamma_surface.py
github-actions / JUnit Test Report
test_gamma_surface
collection failure
Raw output
ImportError while importing test module '/home/runner/work/matscipy/matscipy/tests/test_gamma_surface.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
/usr/lib/python3.10/importlib/__init__.py:126: in import_module
return _bootstrap._gcd_import(name[level:], package, level)
test_gamma_surface.py:5: in <module>
from matscipy.gamma_surface import *
/usr/local/lib/python3.10/dist-packages/matscipy/gamma_surface.py:2: in <module>
from ase.build import stack
/usr/local/lib/python3.10/dist-packages/ase/build/__init__.py:17: in <module>
from ase.build.connected import (connected_atoms, connected_indices,
/usr/local/lib/python3.10/dist-packages/ase/build/connected.py:3: in <module>
from ase.neighborlist import NeighborList
/usr/local/lib/python3.10/dist-packages/ase/neighborlist.py:4: in <module>
import scipy.sparse.csgraph as csgraph
/usr/lib/python3/dist-packages/scipy/sparse/__init__.py:267: in <module>
from ._csr import *
/usr/lib/python3/dist-packages/scipy/sparse/_csr.py:10: in <module>
from ._sparsetools import (csr_tocsc, csr_tobsr, csr_count_blocks,
E ImportError: numpy.core.multiarray failed to import